Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi80g00001 ATGTACTCAAATCCTCCTATGGATTATGCTTATCATACACCTTCATCTCATCAATGGAGCATTCCTCCAACCTATTCCACACCCACACCAACACCTTCATTTCCATCATTCCCATGGGAACTCTTCACACCTTACTACACTCATGGATCTTCATCACCAAAATTTTATCTAAATCATGGATATTCACCTCATACACCTACCTCATATCCACCACCACCTAACTCATATTCATCATCTCATTATCCATTCTACTACAATAATCATCATCAACCACTGCAATCAACAAAAACCTATCACACATTCACACAACATCATCCAATGAACACTTCCACCCATATGGGTAGTTACTACCAAGAAGCAACAAACCAATTTCACTATCCAGAAATTTCCCCTGTGAAACAGAAATCATGTAAGTTGTCTAACTTGAGATTCTCCTCCTTATTATCGGTTAAAACCGACAAACACAAAAGAGGAAAAAGAAGAACTATAACAAGAAAAGAAAAGAGAGCTTATGAACCAAAAACTCACACAAGATTTTCGACGGCGTTACTAACCATTTCACCAGAACCACAGATGCTCGATTCAAACACCGAACCTCCCGACAACAACGACCCCACGGTGGATGACTACAACGAAGCTCACGAAATCGTGGAGCTCAACTCCGTGGAACTGCTCGCGAAACATCTCCATTTCTGTGAGATTTGTGGGAAAGGTTTCAAGCGCGACGCAAATCTCCGACTGCACTTGCGAACCCACACCAAATCCTCTCCCAACGTTTCCGCAACACTCGCTCTCCAGCACCAATTCCTCTCCCAACGTTTCCGCAACACTCGCTCTCCAGCACCAAATCCTCCCTGCCAAGCAGAATCCTCCCTCTGTGAAGCCGCCAACACTCCCAACTTCGGCCTCGTCGTACTCCGCCTCATCGCCGAACCAGCCGTCGATGCTCAGATCCGTCAATCCACAGCCGTCAACTTCAAAAACCACCTCCGTCTCCGATGGGAGTTAGAAGAGAGCTCCATCCTTGAAGCCGAGAAAGAACATATCAAAACCCTATCCGTTTCTCTCATGCTTGTCGTTTCTCCCAAAACCCAATCTCAACTTAGCGAAGCTCTAGCTATCAGTGGTAACCACGATTTTCCTAAAGCATGGCCTACGTTTCTCGCTGAACTCGTCACCAATCTCCAGAATGCATCTCAGGTTAACGAGTACACTTCCATTAACGACATTCTTAGTACTGTTGATTCAATTTTCGGGAAATTTCGTGTTCAGTTTCATTCCAGTGATATTTGGATTGACTCGAAGTATTGTCTCGATAATTTCGCTGCTCATTTGCTTGAAACTTTGCTTAAAACTGCATCGTTGATTGACGTTGCTGCTATGGCGGCACCTCCACTCACAATCGTAACTATAATTCCCACAAGGTACCCTGCTTCAAGACTTTTCACCAATATCATTTTCAGTGTGTCCTATTTAATGTATCTCATGGAATTTGAGCTCATGAATCTTAGTCCAGACTTGGCAAATATTCTATTGACAGTAAATCTAGTTTTTGATCCTGGACCACACCAATTGTGGCAACGTTGCTTTGGGGATGGCGTGAGATGGATGAAAGATTGTATGACATTAATGGAAGACACTCGGAACAGTACCAATTCAATGTTTAGGATCGTTGTGGATTTTGTTTTCTCCTCTTTTTTTGATACTAACACTTACTGCTCCAAATCTATGTTCTACAACATTGTTAGAGGTTCCTTAACAATGTTAAAAACAACACAAATAAGAGAAAAGGTTCTAGTTTCTGCTAAGCACTACATTAGTGACGATGGAACAATCGACGGGATTGATGAGAGTTACACTGTTATAGATAGAAATGAATTGATGGAAATTCACATACCAAGCTACTTAAGTTCCATTAGCAAGGGTGTGGCAACTGTTATGGTATCTGACTCAAGTTGGAATGATAGAATCACCACTCCGCATCGTGTAAACTGCACAGATTTGTTTCAAGCAAGAGTTTTTGCAGGCGTTTACAGGTTCATGGTTCCAAATTTCTTCAAGAATTTCATTAACGTTCTTACCGTATTGGCGAAAAATGAATTTCTCTATTTACATGAGACGGAAATTTTTCCTGCTAATTTGGCCTCATTGGTAGATGCAATGTCTGTTTTTCTGCTAATTGTTTTTCTTTCAAGAGTTTCTCTAAGAAAGATTCTTCTGATAGGTGAATTTGAAGAGTATCCGGATGAGAACCGAATGCATTGCACTGCTCGGTTAGTCGATATGCTGAATTCATTTGCAAATGAGTTTCAAAATTGTGATGAAAGTAATTCTACCAGAGATTTTCTTATGGATGAGATCAAAGTTCTTGAGGAAGCCAAGTGTATTACTCTTCCAAATTTCATGCCAAGAACTGCTGTTCTTATATTACTTCAGCGAAAATTGCAGGTTTGTACTCCTCGAGCAGCGGAGCATCTTATTTCTAAGAAGAAAAGGTTGCAGCAAGAACTAGACGTGGCTAGAGAGAAACTTAAGCACTTGCAGACAGATGTAAAGTTGCTAGTAAAGGAGGTGAAGTCCCTTAGAAGCTCTCAGTTAGAACTAAAGCAGCAGCTCGACGAATTGAAGGAGGAAAATATAAGTGCAGGCTCACTTGAGTTAATGGAACATAGACATTACAAGAACATGACGCAGTTCTTAGCATCTTCCGCTGAAAATGGTTGGCAAGTTCTTGGTGGTTCTGTCTCCTCTAAAGAGATTTCGTTGAATGAGATTGAACCTGGTCCGCCGACTATTCTTGTTTTAGAACCTTGA 2814 0.414 MYSNPPMDYAYHTPSSHQWSIPPTYSTPTPTPSFPSFPWELFTPYYTHGSSSPKFYLNHGYSPHTPTSYPPPPNSYSSSHYPFYYNNHHQPLQSTKTYHTFTQHHPMNTSTHMGSYYQEATNQFHYPEISPVKQKSCKLSNLRFSSLLSVKTDKHKRGKRRTITRKEKRAYEPKTHTRFSTALLTISPEPQMLDSNTEPPDNNDPTVDDYNEAHEIVELNSVELLAKHLHFCEICGKGFKRDANLRLHLRTHTKSSPNVSATLALQHQFLSQRFRNTRSPAPNPPCQAESSLCEAANTPNFGLVVLRLIAEPAVDAQIRQSTAVNFKNHLRLRWELEESSILEAEKEHIKTLSVSLMLVVSPKTQSQLSEALAISGNHDFPKAWPTFLAELVTNLQNASQVNEYTSINDILSTVDSIFGKFRVQFHSSDIWIDSKYCLDNFAAHLLETLLKTASLIDVAAMAAPPLTIVTIIPTRYPASRLFTNIIFSVSYLMYLMEFELMNLSPDLANILLTVNLVFDPGPHQLWQRCFGDGVRWMKDCMTLMEDTRNSTNSMFRIVVDFVFSSFFDTNTYCSKSMFYNIVRGSLTMLKTTQIREKVLVSAKHYISDDGTIDGIDESYTVIDRNELMEIHIPSYLSSISKGVATVMVSDSSWNDRITTPHRVNCTDLFQARVFAGVYRFMVPNFFKNFINVLTVLAKNEFLYLHETEIFPANLASLVDAMSVFLLIVFLSRVSLRKILLIGEFEEYPDENRMHCTARLVDMLNSFANEFQNCDESNSTRDFLMDEIKVLEEAKCITLPNFMPRTAVLILLQRKLQVCTPRAAEHLISKKKRLQQELDVAREKLKHLQTDVKLLVKEVKSLRSSQLELKQQLDELKEENISAGSLELMEHRHYKNMTQFLASSAENGWQVLGGSVSSKEISLNEIEPGPPTILVLEP 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi80g00001 937 SMART c2h2final6 230 252 IPR013087 -
Vivi80g00001 937 Gene3D - 267 513 IPR011989 -
Vivi80g00001 937 Gene3D - 859 935 IPR029026 -
Vivi80g00001 937 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Vivi80g00001 937 PANTHER IMPORTIN-7, 8, 11 268 471 - -
Vivi80g00001 937 SUPERFAMILY beta-beta-alpha zinc fingers 228 255 IPR036236 -
Vivi80g00001 937 Coils Coil 823 878 - -
Vivi80g00001 937 Gene3D Classic Zinc Finger 230 260 - -
Vivi80g00001 937 ProSiteProfiles Importin-beta N-terminal domain profile. 288 359 IPR001494 GO:0006886|GO:0031267
Vivi80g00001 937 Gene3D - 562 673 IPR036962 GO:0004553|GO:0005975
Vivi80g00001 937 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Vivi80g00001 937 SUPERFAMILY (Trans)glycosidases 580 700 IPR017853 -
Vivi80g00001 937 SMART IBN_N_2 288 359 IPR001494 GO:0006886|GO:0031267
Vivi80g00001 937 FunFam Zinc finger protein 574 230 254 - -
Vivi80g00001 937 SUPERFAMILY ARM repeat 268 479 IPR016024 -
Vivi80g00001 937 Pfam Importin-beta N-terminal domain 288 352 IPR001494 GO:0006886|GO:0031267
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi80g00001 595 811 Glycoside Hydrolase AT5G20950 27.200 7.18e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi80g00001 Glyco_hydro_3 2.8e-05 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi80g00001 K18423 - vvo:131623792 1811.96