Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi806g00007 ATGCAATTTTCTACCACCAAAGATTCAGAGTTTACATATTTAGAACACATTCAACAATACCTTCTTCATGATGATTCCAACATCCTCACATCAGGTCAAAATATCCAAAGCCCAAACGATATTTCAAACACAACTCCATCTCCACGTGAAGTTCACGCGCCTCCTACATGGAAGCGCTACCGGGGCGTGAGGCGTAGGCCTTGGGGGAAGTTTGCGGCTGAGATCAGAGATCCGAAGAAGAATGGTGCTAGGGTTTGGCTTGGAACTTACTTGACGGAAGAGGAGGCAGGTATGGCTTATGATAAAGCTGCTTTTAAGATGCGTGGCCGAAAGGCCAAGCTCAATTTTCCTCATCTTATTGGCTCTGACGTATACTTTGACATGTACATGTCAGAGCCAAAAAGAGAGATGACTTTGAAGCGTGAGTCGCTCGAAGTTTCTTCTTCATCGGATGATAGCTGTGAGTCATTGTCACAAGGTTCAAAGAGAAAGAGGAGCATGGCTAATCTACTCAACAAATTAGCCAAAAATAGAAGCCAAGCTATGGTGGTTGAAAGTGAAATGGCTTCAGAAGAAAATGATGTTGAGCAATGGTTGAATGAGTTGAATGATTGCTCTCTAATGTGGTGCTGTTAG 636 0.434 MQFSTTKDSEFTYLEHIQQYLLHDDSNILTSGQNIQSPNDISNTTPSPREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGMAYDKAAFKMRGRKAKLNFPHLIGSDVYFDMYMSEPKREMTLKRESLEVSSSSDDSCESLSQGSKRKRSMANLLNKLAKNRSQAMVVESEMASEENDVEQWLNELNDCSLMWCC 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi806g00007 211 PANTHER DNA-BINDING DOMAIN 47 186 IPR044808 GO:0003700|GO:0009873
Vivi806g00007 211 FunFam Ethylene-responsive transcription factor 2 58 118 - -
Vivi806g00007 211 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vivi806g00007 211 PRINTS Ethylene responsive element binding protein signature 99 119 IPR001471 GO:0003700|GO:0006355
Vivi806g00007 211 MobiDBLite consensus disorder prediction 142 163 - -
Vivi806g00007 211 CDD AP2 58 119 IPR001471 GO:0003700|GO:0006355
Vivi806g00007 211 MobiDBLite consensus disorder prediction 149 163 - -
Vivi806g00007 211 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Vivi806g00007 211 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Vivi806g00007 211 MobiDBLite consensus disorder prediction 31 52 - -
Vivi806g00007 211 MobiDBLite consensus disorder prediction 31 50 - -
Vivi806g00007 211 Gene3D AP2/ERF domain 58 118 IPR036955 GO:0003700|GO:0006355
Vivi806g00007 211 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Vivi806g00007 211 Coils Coil 181 201 - -
Vivi806g00007 211 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi806g00007 47 149 AP2-EREBP Transcription Factor Family AT2G44840 60.000 1.55e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi806g00007 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi806g00007 K09286 - gmx:102663872 246.514