LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi806g00006	ATGGCTTCCACCACCAATGACTCAGATTTTGCATATTTGGAACACATTCTCTTTGATGATTCCAGCATTGTTACATCACATCAAGCTTTCCCTAACCCTAAAAGTGATAATGATTCAGACACTGCTGTGAAGGTGCGTGAAGTAAGCACGCCTCCGATATGGAAGCGATACAAGGGCGTGAGGCGAAGGCCATGGGGAAAATTTGCGGCAGAGATAAGGGATCCGAAAAAGAATGGCGCTAGAGTTTGGTTAGGAACTTATTTGACCGAGGAGGAAGCAGCATTGGCTTATGATAATGCTGCTTTCAAGATGCGTGGCCAGAAAGCCAAGCTTAATTTTCCTCACCTCATTGGCAACGATGTGTCCACATCGAAGCCAAAGAGGGAGGTGGTTTTAAAACACGACTCTCTAGAACTTTCTTCGTCTGAAGGAAGTTGTGAGTCGTCGTCACTCGGATCGAAGAAGAGGAGGGGTATGGCTGATCTACTTAACAAATTAGCTAAGAATAGAAGTCAAGCCATGGTGGTTGAGAATGAAAAGTCCTTACAAGAAGATGATTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTACAATATGGAGCTCATAG	612	0.4412	MASTTNDSDFAYLEHILFDDSSIVTSHQAFPNPKSDNDSDTAVKVREVSTPPIWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDNAAFKMRGQKAKLNFPHLIGNDVSTSKPKREVVLKHDSLELSSSEGSCESSSLGSKKRRGMADLLNKLAKNRSQAMVVENEKSLQEDDFEQWVNELNDCTTIWSS	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi806g00006	203	CDD	AP2	55	116	IPR001471	GO:0003700\|GO:0006355
	Vivi806g00006	203	Gene3D	AP2/ERF domain	55	115	IPR036955	GO:0003700\|GO:0006355
	Vivi806g00006	203	Pfam	AP2 domain	56	106	IPR001471	GO:0003700\|GO:0006355
	Vivi806g00006	203	SUPERFAMILY	DNA-binding domain	56	115	IPR016177	GO:0003677
	Vivi806g00006	203	FunFam	Ethylene-responsive transcription factor 2	55	115	-	-
	Vivi806g00006	203	ProSiteProfiles	AP2/ERF domain profile.	56	114	IPR001471	GO:0003700\|GO:0006355
	Vivi806g00006	203	PRINTS	Ethylene responsive element binding protein signature	96	116	IPR001471	GO:0003700\|GO:0006355
	Vivi806g00006	203	PRINTS	Ethylene responsive element binding protein signature	57	68	IPR001471	GO:0003700\|GO:0006355
	Vivi806g00006	203	SMART	rav1_2	56	120	IPR001471	GO:0003700\|GO:0006355
	Vivi806g00006	203	PANTHER	DNA-BINDING DOMAIN	39	177	IPR044808	GO:0003700\|GO:0009873

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi806g00006	56	119	AP2-EREBP Transcription Factor Family	AT2G44840	82.812	1.98e-35	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi806g00006		AP2	9.8e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi806g00006	K09286		-	gmx:102663872	233.802