Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi806g00005 ATGGCTTCCACTACCAATGATTCAGATTTGGCATATTTGGAACACATTCAACAATACCTTCTTTGTGATGATTCAAGCTTTCTAGCATCTTATCAAGCTTCTTTAAGCCCTAAAAGTGACAGTGATTCGGAAAAATCTATAGGAACGGGTGAGGTAAGCGCGGCTCCAGTGTCTTGGAAGCGGTACAAGGGAGTGAGACGTAGGCCGTGGGGGAAATTTGCGGCGGAGATCAGAGATCCAAAAAAGAATGGTGCTAGAGTTTGGTTAGGAACTTATTTGACCGAGGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCATAAGGCCAAGGTTAATTTTCCCCACCTCATTGGCAACGACGTGTCTACATCGGAGCCAGAAAGGGAGGTGGTTTTGAAACGAGACTCACCCAAGCCCTCTTCTTCAGAGGGAAGTTGGGAGTCATCGTCACCTGGATCGAAGAGGAGGAGGGGTATGGCTGACCTACTTAACAAATTAGCCAAGAATAGAAGTCAAGCCATGGTGGTTGAAATTAAAAATACCTCACAGGAAAATGACTTTGAGCAATGGGTGAATGAGTTGAGTGATTGCACTCTAATCTGGAGTTCCTAG 627 0.4577 MASTTNDSDLAYLEHIQQYLLCDDSSFLASYQASLSPKSDSDSEKSIGTGEVSAAPVSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDKAAFKMRGHKAKVNFPHLIGNDVSTSEPEREVVLKRDSPKPSSSEGSWESSSPGSKRRRGMADLLNKLAKNRSQAMVVEIKNTSQENDFEQWVNELSDCTLIWSS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi806g00005 208 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Vivi806g00005 208 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vivi806g00005 208 PRINTS Ethylene responsive element binding protein signature 101 121 IPR001471 GO:0003700|GO:0006355
Vivi806g00005 208 FunFam Ethylene-responsive transcription factor 2 60 120 - -
Vivi806g00005 208 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Vivi806g00005 208 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Vivi806g00005 208 MobiDBLite consensus disorder prediction 143 157 - -
Vivi806g00005 208 MobiDBLite consensus disorder prediction 124 162 - -
Vivi806g00005 208 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Vivi806g00005 208 PANTHER DNA-BINDING DOMAIN 45 184 IPR044808 GO:0003700|GO:0009873
Vivi806g00005 208 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Vivi806g00005 208 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi806g00005 61 148 AP2-EREBP Transcription Factor Family AT2G44840 69.318 4.75e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi806g00005 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi806g00005 K09286 - gmx:102663872 236.113