Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi806g00003 ATGGCTTCCACCACCAATGATTCAGATTTGGCATATTTGGAACACATTCAACAATACCTTCTTTGCGATGATTCCAGCCTTCTAACATCTGGCCAACCTTTCCCAAGTCCTAAAAGTGACAATGATTCAGACACAATTATAGAGCGGAGGGAAGTAAGCACGCCTCCTATATGGAAGCGGTACAAGGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCAGCAGAGATCAGAGATCCAAAGAAGAATGGTGCTCGGGTTTGGTTAGGAACTTATTTGACCGAGGAAGAGGCAGCTTTGGCTTACGACAAAGCTGCATTCAAGATGCGTGGCCAAAAAGCTAAGGTTAATTTTCCCCATCTCATTGGCAATGACGTGTCTAAGTCGGTATCAGAGAGGGAAGTGGGTTCAGTGGTTTTGAAACGGGACTCGCCAGAGTCTTCATCGTCCGTGGGAAGTTGTGAGTCATTGTCACCTGGATCAAAGAAGAGGAAGGGCATGGCTGATCTACTTAACAAATTAGCGAAGAGTCCATGTAAAGCTATGGTGGTTGAGAATGAGAAATCCTTACAAGAAAATGATTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTCTAATCAGGAGCTCCTAG 633 0.4581 MASTTNDSDLAYLEHIQQYLLCDDSSLLTSGQPFPSPKSDNDSDTIIERREVSTPPIWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDKAAFKMRGQKAKVNFPHLIGNDVSKSVSEREVGSVVLKRDSPESSSSVGSCESLSPGSKKRKGMADLLNKLAKSPCKAMVVENEKSLQENDFEQWVNELNDCTLIRSS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi806g00003 210 CDD AP2 59 120 IPR001471 GO:0003700|GO:0006355
Vivi806g00003 210 MobiDBLite consensus disorder prediction 138 164 - -
Vivi806g00003 210 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Vivi806g00003 210 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vivi806g00003 210 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Vivi806g00003 210 PANTHER DNA-BINDING DOMAIN 45 178 IPR044808 GO:0003700|GO:0009873
Vivi806g00003 210 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Vivi806g00003 210 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Vivi806g00003 210 MobiDBLite consensus disorder prediction 141 156 - -
Vivi806g00003 210 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Vivi806g00003 210 FunFam Ethylene-responsive transcription factor 2 59 119 - -
Vivi806g00003 210 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi806g00003 60 149 AP2-EREBP Transcription Factor Family AT2G44840 66.667 2.57e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi806g00003 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi806g00003 K09286 - gmx:102663872 238.81