Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi806g00002 ATGGCTTCCACCACCAATGATCCAGATTTTGCATTTTTGGAACATGTTCAACAATACCTTCTTTGTGATGATTCCAGTTTTCAAACATCTTATCAATCTTTTTCAAGCCCTAAGAGTGACAGTGATTCAGACAAATCTGTAGGGGTAAGTGAGGTAAGTGCACCTCCGGTGTCTTGGAAGCGGTACAAGGGCGTGAGGCGTAGGCCATGGGGAAAGTTTGCAGCGGAGATCAGAGATCCAAAAAAGAATGGTGCTAGGGTTTGGTTAGGGACTTATTTGACCGAGGAAGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCATAAAGCCAAGGTTAATTTTCCCCACCTTATTGGCAACGACGTGTCTATAGATACGTCAGAGCCAAAAAGGGAGGTGGTTTTGAAACGTGACTCGCCTGAACCTTCTTCATCGGAGGGAAGTTACGAGTCATCGTCAACGGGGTCAAAGAGGAGGAGGGGTATGGCTGACTTACTAAACAAATTAGCCAAGAATAGAAGTCAAGCCATGGTGGTTGAAATTAAAAAGACCTCACAGGAAAATGACTTTGAGCAATGGGTGAATGAGTTGAGTGATTGCACTCTAATCTGGAGCTCCTAG 633 0.4502 MASTTNDPDFAFLEHVQQYLLCDDSSFQTSYQSFSSPKSDSDSDKSVGVSEVSAPPVSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDKAAFKMRGHKAKVNFPHLIGNDVSIDTSEPKREVVLKRDSPEPSSSEGSYESSSTGSKRRRGMADLLNKLAKNRSQAMVVEIKKTSQENDFEQWVNELSDCTLIWSS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi806g00002 210 MobiDBLite consensus disorder prediction 29 50 - -
Vivi806g00002 210 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Vivi806g00002 210 MobiDBLite consensus disorder prediction 29 48 - -
Vivi806g00002 210 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Vivi806g00002 210 PRINTS Ethylene responsive element binding protein signature 101 121 IPR001471 GO:0003700|GO:0006355
Vivi806g00002 210 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vivi806g00002 210 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Vivi806g00002 210 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Vivi806g00002 210 MobiDBLite consensus disorder prediction 145 162 - -
Vivi806g00002 210 FunFam Ethylene-responsive transcription factor 2 60 120 - -
Vivi806g00002 210 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Vivi806g00002 210 MobiDBLite consensus disorder prediction 133 163 - -
Vivi806g00002 210 PANTHER DNA-BINDING DOMAIN 43 180 IPR044808 GO:0003700|GO:0009873
Vivi806g00002 210 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi806g00002 54 150 AP2-EREBP Transcription Factor Family AT2G44840 65.979 4.70e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi806g00002 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi806g00002 K09286 - gmx:102663872 218.779