Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi800g00006 ATGGAGAAAAACCCTAGTTCATCAAGAATTGACAGAAAATTCATTGAGAGCAATAGAAGAAAAGAAATGAAGAATCTCCACCACAAACTCAATTCAATTCTTCCTCATCAAACCTCGAAGGAGGCTATTTCGAGGCCGGATCGGCTAGAGGAAGCAACAACTTACATAAAGAAGTTACAGATAAATTTGGAGAAAATGAAGGAAAAGAAGAAGCTTCTACTAGAAGAAATTCAAAGGCAGAAGAAGTTGATGTTAAAATCTCCAAAAATTGAGATCCAACAAATAGGTTTAATCTTAGAGGTTGTTCTAATAACTGGATTGAATTCTCAGTTTTTGTTGAATGAAACCATTAGAATTCTTAATGAAGAAGGAGTTGATATTGTTAATGCTAGCTATAAAGTCAATGCAGATTCAGTTTTCCATTCAATACATTGTCAGGTACAAGAATTTGGCAATGAAAGTGCAAGAGTATATGAGAGATTGAAGAAGTCTATGCATGATTATCAGCCTAATGCATGTCTTTGA 525 0.341 MEKNPSSSRIDRKFIESNRRKEMKNLHHKLNSILPHQTSKEAISRPDRLEEATTYIKKLQINLEKMKEKKKLLLEEIQRQKKLMLKSPKIEIQQIGLILEVVLITGLNSQFLLNETIRILNEEGVDIVNASYKVNADSVFHSIHCQVQEFGNESARVYERLKKSMHDYQPNACL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi800g00006 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 78 IPR036638 GO:0046983
Vivi800g00006 174 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 164 - -
Vivi800g00006 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Vivi800g00006 174 Pfam Helix-loop-helix DNA-binding domain 12 60 IPR011598 GO:0046983
Vivi800g00006 174 Gene3D - 1 87 IPR036638 GO:0046983
Vivi800g00006 174 Coils Coil 49 83 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi800g00006 4 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.899 1.54e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi800g00006 HLH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi800g00006 - - gmx:100784418 199.904