Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g05069 ATGGACGCTCTCGATTCAAATCCTCCAATCGATCCACCTCCCCAAACCGACACCACATCAGATTACCCCAACCAATCTCAAACCCTAACTCCCGAAAACGGCATCAACGGAAACTCACCCGAAAACGGCCAATCCGCCGCCGCCGATAACAATCCACTGCCACGTATCGCGAATCAATTACTCTCCGAGAACGGTTTGACCGGCAACACCCGAAGCGGAACCGATAAGGATCAATCAGGCGGCGAAGAAGAGACAACCAGCAAGCGCCGCCGTAGAAGTCGGTGGGATCCACAGCCAGATTCAAACGATCAGACTAGCGGCGAAACTGGTGCTGGAACGAAGAAAAGGAAATCACGCTGGGCAGACGATGAGCCGAAACCGGTAATTCAGCTTCCTGATTTCATGGGTGGGATTGAATTTGATCCGGAAATTCAGGCTTTGAATAGTAGGTTACTTGAGATTAGTAGAATGTTGCAATCTGGTTTGCCTTTGGATGATCGTCCTGAAGGGGCTAGATCTCCTTCGCCGGAACCGATATATGATAATATGGGAATTAGGATTAATACTAGAGAGTATCGTGCGCGCGAGAGGTTACAGAAGGAGAGACAAGAGATTATATCTCAGATTATTAAGAAAAATCCTGCATTTAAGCCGCCGGCAGATTATAGACCACCGAAGCTTCAGAAGAAGCTTTATATACCAATGAAGGAGTACCCTGGTTATAATTTCATCGGGCTTATTATTGGTCCTAGGGGGAATACTCAGAAACGGATGGAGAAAGAAACTGGTGCTAAGATTGTGATTCGAGGGAAAGGGTCTGTGAAAGAAGGGAGGTTGCAACAGAAGAGGGATTTGAAACCGGATCCTTCGGAGAATGAAGATTTGCATGTTTTGGTGGAGGCTGATACTGCGGATGCGCTTGAAGCTGCGGCTGGTATGGTGGAGAAACTCTTGCAGCCTGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCTTTGAATGGAACCATTAGGGATGAAGAGTATTGTCGGCTGTGTGGTGAACCTGGTCATCGTCAATATGCATGTCCTACAAGGACTTCAACGTTTAAGAGTGAGGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTGAAGGGTGCTACAGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTGGGTGGTACTGTTCCTGAATCTGCAACAAAGCAAACTAGTACTTTGGCAATTGGGGCGGGCAGTTCTGGAAGCAATCCACCTTGGGCTAACAACTCAGGTTCGGCTGGTAGTACACCACATCCTGGTTTAGGGTCTGGTGCAGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGATATTTGCCGCCCACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCCAAAGTTATTAAAGATCGAATGACAGGGTTGAGTAAAGGATATGGTTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTGGCTATGAATGGTTATCGTCTCGAGGGCCGAACCATTGCAGTGAGAGTTGCGGGTAAGCCTCCTCAGCCTGTTGTGCCTCCTGGCCCACCTGCGTCGGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGCGCATATCCGTCCCAACAATACACCGGCGGTGGTCCACTTGGGAGTGCTCCTCCTCCTCCTCCTCCTGGGAGTTACGGTGGTACTCCAGTCCCATGGGGACCTCCTATTCCTCAATACAATCCTTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCTCCTATGCAAGGTCACCCTATGCCTCCTTATGGTGTTCAATATCCACCCATGCCGACAGGTCCCCCCGGTGCCACACCCCCGCCTGCGACTTCTGGTGAAATGCAGCAGAATTACCCTCCTGGAGTGCAGTCTGATAACAACACATCTACTCAGTCTGTACAGACCAACATGTATGGGAACACTGTACCTTCAATGCCACCAGCAGCTCCACCAACATATCCTGCATCTTATGGTTATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCTCCTTCTGCCCCTACAGACCAATCCCACAACATTGTAAACCCCCCTTGGGCTAGCAACCATTCCGCCCCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCACCTATGCCTCCTCCTAACTCATCGACGGAGAAGACATCATATGGAGCTGATTCAGAATATGAGAAATTCATGGCAGAGATGAAGTGA 2343 0.4853 MDALDSNPPIDPPPQTDTTSDYPNQSQTLTPENGINGNSPENGQSAAADNNPLPRIANQLLSENGLTGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQTSGETGAGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGAGSSGSNPPWANNSGSAGSTPHPGLGSGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYTGGGPLGSAPPPPPPGSYGGTPVPWGPPIPQYNPYAPPPPGSTMYPPMQGHPMPPYGVQYPPMPTGPPGATPPPATSGEMQQNYPPGVQSDNNTSTQSVQTNMYGNTVPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPSAPTDQSHNIVNPPWASNHSAPPPPSSADQSQSIGNAPMPPPNSSTEKTSYGADSEYEKFMAEMK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g05069 780 Gene3D - 141 218 IPR047086 -
Vivi7g05069 780 Gene3D - 348 400 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 272 292 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 17 75 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 1 128 - -
Vivi7g05069 780 ProSiteProfiles Type-1 KH domain profile. 242 314 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 631 780 - -
Vivi7g05069 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 535 IPR000504 GO:0003723
Vivi7g05069 780 Gene3D K Homology domain, type 1 219 347 IPR036612 GO:0003723
Vivi7g05069 780 MobiDBLite consensus disorder prediction 543 560 - -
Vivi7g05069 780 Pfam Splicing factor 1 helix-hairpin domain 116 223 IPR032570 -
Vivi7g05069 780 PANTHER RNA-BINDING PROTEIN RELATED 77 585 IPR045071 -
Vivi7g05069 780 ProSiteProfiles Zinc finger CCHC-type profile. 349 363 IPR001878 GO:0003676|GO:0008270
Vivi7g05069 780 MobiDBLite consensus disorder prediction 76 98 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 543 600 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 425 448 - -
Vivi7g05069 780 CDD KH-I_BBP 226 319 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 163 182 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 720 766 - -
Vivi7g05069 780 FunFam splicing factor-like protein 1 444 546 - -
Vivi7g05069 780 SMART rrm1_1 465 538 IPR000504 GO:0003723
Vivi7g05069 780 SMART kh_6 227 319 IPR004087 GO:0003676
Vivi7g05069 780 MobiDBLite consensus disorder prediction 631 649 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 425 455 - -
Vivi7g05069 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 542 IPR000504 GO:0003723
Vivi7g05069 780 ProSiteProfiles Zinc finger CCHC-type profile. 375 389 IPR001878 GO:0003676|GO:0008270
Vivi7g05069 780 FunFam splicing factor-like protein 1 219 347 - -
Vivi7g05069 780 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 227 353 IPR036612 GO:0003723
Vivi7g05069 780 MobiDBLite consensus disorder prediction 110 126 - -
Vivi7g05069 780 SMART c2hcfinal6 374 390 IPR001878 GO:0003676|GO:0008270
Vivi7g05069 780 SMART c2hcfinal6 348 364 IPR001878 GO:0003676|GO:0008270
Vivi7g05069 780 MobiDBLite consensus disorder prediction 650 683 - -
Vivi7g05069 780 SUPERFAMILY RNA-binding domain, RBD 460 552 IPR035979 GO:0003676
Vivi7g05069 780 Pfam KH domain 242 290 IPR004088 GO:0003723
Vivi7g05069 780 Gene3D - 435 546 IPR012677 -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 581 600 - -
Vivi7g05069 780 MobiDBLite consensus disorder prediction 685 719 - -
Vivi7g05069 780 FunFam splicing factor 1 347 400 - -
Vivi7g05069 780 SUPERFAMILY Retrovirus zinc finger-like domains 345 391 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g05069 Vivi-Chr7 137570852 137575452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g05069 464 673 Eukaryotic Initiation Factors Gene Family AT3G16380 26.027 1.28e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g05069 K13095 - gmx:100800982 1129.78