Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g05042 ATGGACATGAATTCGAATCATACTCCTGTTCTCACGGATACTGCTCCGATAACAAATTCTAGGCTACACGTGCATTCCAGTTTGTTGCCTTATTCCCATACCGGTGCAACCTTTTCACATGGTATGCTATTGAATATCCCAAGGAAGAAGACGGGAATTCTCGAAGACGTTCTTTGTTGCAATTGGTTGGATGCCATGAAATCATCTTCACCTCCACCGAAGAATGTAACAAAGGATGTTAATCACGGGTTTGCATCATCTGAAACTGATCCTTATTTTAACTGGCTGCTAAAATATCCATCTGCCCTTACATCTTTTGATCAAATTACGAACTATGCAAAAGGAAAAAGAATTGCATTGTTTTTGGACTATGATGGAACTCTTTCACCAATTGTCGATAACCCTGACTGTGCTTTCATGTCGGAGAATATGCGCACTGCTGTTAAAAAGGTGGCTGAGTATTTTCCAACTGCAATAATTAGTGGAAGAAGTCGCGACAAGGTGCATGAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATAATTGGCCCTGTTAGACAATCTCTATCTGTAACACATAACAAGCAGGGAAAAAAGGTTAATTTATTCCAGCCTGCTGCTGAGTTCCTTCCTATGATTAATGAGGTACTGAAATCTCTCATTGAGTGTACGAAAGACATCAAAGGATCGACAATTGAGAATAATAAATTTTGTGTATCTGTTCATTACCGCAATGTAGATGAGAAGAATTGGGATTTGGTGGGGCGACGAGTTAATGATGTTCTAAAGGGCTTTCCACGTTTGCGGTTAACTCATGGTCGCAAGGTTTTAGAGGTCCGGCCTGTGATTAACTGGGATAAGGGAAAAGCCGTCACGTTTTTACTTGAGTCACTTGGACTTAACAATTGCGACGATGTGCTTCCTATATATATCGGCGATGATCGAACTGATGAAGATGCATTTAAGGTTTTGAGAGAGGGAGATAAAGGTTACGGGATTTTAGTGTCTTCTGCACCAAAGGAAAGCAATGCAACTTACTCTCTTCGTGATCCGTCCGAGGTCATGGAATTTCTGAAGTCACTTGTGGTTTGGAAGTCAAGCCCCTTAAAAAGCCATATATAG 1140 0.4079 MDMNSNHTPVLTDTAPITNSRLHVHSSLLPYSHTGATFSHGMLLNIPRKKTGILEDVLCCNWLDAMKSSSPPPKNVTKDVNHGFASSETDPYFNWLLKYPSALTSFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSENMRTAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSLSVTHNKQGKKVNLFQPAAEFLPMINEVLKSLIECTKDIKGSTIENNKFCVSVHYRNVDEKNWDLVGRRVNDVLKGFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGDKGYGILVSSAPKESNATYSLRDPSEVMEFLKSLVVWKSSPLKSHI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g05042 379 Pfam Trehalose-phosphatase 121 358 IPR003337 GO:0003824|GO:0005992
Vivi7g05042 379 Gene3D - 220 377 IPR023214 -
Vivi7g05042 379 Gene3D - 118 219 IPR023214 -
Vivi7g05042 379 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 373 IPR044651 GO:0004805|GO:0005992
Vivi7g05042 379 NCBIfam HAD-IIB family hydrolase 120 331 IPR006379 -
Vivi7g05042 379 CDD HAD_TPP 119 362 - -
Vivi7g05042 379 FunFam Trehalose 6-phosphate phosphatase 118 206 - -
Vivi7g05042 379 NCBIfam trehalose-phosphatase 115 368 IPR003337 GO:0003824|GO:0005992
Vivi7g05042 379 SUPERFAMILY HAD-like 119 369 IPR036412 -
Vivi7g05042 379 FunFam Trehalose 6-phosphate phosphatase 212 288 - -
Vivi7g05042 379 FunFam Trehalose 6-phosphate phosphatase 218 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g05042 Vivi-Chr7 135668866 135671938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g05042 112 367 Trehalose Biosynthesis Gene Families AT1G70290 26.374 6.74e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g05042 K01087 - gmx:100775207 665.611