Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g05028 ATGTTTGTTGACAAACCCTTCTCCCACTTCTCTGACGGCTTCCACCACCTCGGTCATTCCAATTTCCAAACCCTAATGGCACCTAAGAAGGAGAAGGCACCGCCACCGTCGTCAAAGCCGGCGAAATCCGGAGGAGGAAAACAGAAGAATAAGAAATGGAGCAAGGGTAAGCAAAAGGAAAAGGTCAATAACATGGTCTTGTTAGACCAAGGCACCTACGATAAGCTTCTTACTGAAGCTCCCAAGTACAAACTCATCACTCTGTCTGTTCTCTCCGATCGTCTACTTCTCACTGAAATTAATGGATCTTTGGCACGTCGTGCGATCAAGGATTTGATGGCGAGAGGTTTGATTAGGTTTGTTTCTACTCATGCTAGCCAACAGATTTACACTAGAGCCACTAATACATAA 411 0.4526 MFVDKPFSHFSDGFHHLGHSNFQTLMAPKKEKAPPPSSKPAKSGGGKQKNKKWSKGKQKEKVNNMVLLDQGTYDKLLTEAPKYKLITLSVLSDRLLLTEINGSLARRAIKDLMARGLIRFVSTHASQQIYTRATNT 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g05028 136 PANTHER 40S RIBOSOMAL PROTEIN S25 26 136 IPR004977 -
Vivi7g05028 136 Gene3D - 46 136 - -
Vivi7g05028 136 Pfam S25 ribosomal protein 32 133 IPR004977 -
Vivi7g05028 136 MobiDBLite consensus disorder prediction 25 61 - -
Vivi7g05028 136 FunFam 40S ribosomal protein S25 46 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g05028 Vivi-Chr7 135310278 135311226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g05028 26 136 Cytoplasmic Ribosomal Protein Gene Family AT2G21580 79.279 3.25e-47 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g05028 K02975 - csv:101215650 149.058