Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g05025 ATGACAATCATCATGAGAAAAACATTGTTAACACTATTATTGTTATCATCAATTTTCTCACTAGCCAACTCATCAAAAAGAAGATCAAGATCTTCCAACAACAACATAGATTGGTGGTGTAACCAAACACCACACCCAGAAACATGCAAATACTACACAAAACAAACCCATTACAATCACAACAAAAACATCAAACACAAATCAAAATTCCGAGAAATTCTCATCCATCTAGCCTTAGAAAGAGCGGTGATCATGCGAAACACAGCGCGCGAATTCGGACAAAACAACTCGATCATAAACAAGAAACAGAAAACCGTGTCGCGCGACTGTTTGAAACTCTACGACAACACAGTTTTTCATCTCAACCGAACATTCTCTAATCTCCATGCCAAAAAAACATGTTCATCATTCGATGCACAAACATGGTTGAGCACTGCTTACACAAACATCGAAACATGTCGAAACGGGGCACTAGACTTAGACATTCCCAACTTCATCACACCAATTATGAAAGTCAACATGACAGAGATCATTAGCAACGGTTTGTTCATCAACTGGGAGTTCGTTAAACGCGACGGCCGTGACCGTTACACCGACGATGATACCGAAGAGGCTTTCCCGAGATGGTTTTCGGTTCGGGAGAGGAAGCTTCTGGAAAGTTCGAGAGTTATTAAGGCGAATATTGTGGTCGCGAAAGATGGTTCCGGGAATTTTAGGAAAGTTCAAGATGCTATAAATGCTGCGGGGAGGAGAAGGTTTAAGACGAGATTTGTTATTCATGTGAAGAGAGGTGTTTATAGAGAGAATATTGAAGTTGGGAAGATGAATGATAATGTTATGTTGGTTGGTGATGGGAGTAGGATTACGGTGATAACGAGTAATAGAAATGTTAAAGCTGGGTTTACTACCTATAGTTCTGCCACTGCAGGAATTGATGGTCTTCACTTCATTGCACGAGACATTACTTTTGAAAACACTGCAGGACCTCGCCGAGGTCAAGCAGTGGCGCTACGATCGGCCTCAGACCTCTCTGTCTTTTACCGTTGTGCTTTTAAAGGCTATCAAGACACTCTTATGGTTCACGCACAACGTCAATTTTTTAGAGAATGCTACATTTATGGTACTGTCGATTTTATTTTTGGCAATGCAGCAGTAGTTTTCCAAAATTGCATTATTCTTGTAAGAAGACCTCTAAACGGCCAAGCAAACATGATCACAGCCCAAGGTCGAGATGACCCATTTCAGAACACTGGAATTTCAATTCATAATTCTCAAATTAGAGCTGCGCCAGATTTCAAACCCGTTGTTGGAAGATTCAATACCTTCTTGGGCCGACCTTGGCAAAGATACTCTAGAGTTGTGGTTATGAAATCATTCATGGATAATTTGATAAGCCCAATGGGTTGGTCTCCATGGGGAGGTACTAATTTTGCTCAAAGCACTCTATTTTATGGAGAGTATAATAACATTGGGCCGGGCTCATCAACAAGGAATAGAGTAAGATGGCCGGGTTATCATGTTATGAAAAGCCCAGCCCAAGCAATACCATTCACTGTTAATAACCTGCTTGCTGGTGCCACGTGGTTACCTTCCACTGGTGTACCATTCACTTCTGGCCTTTAA 1623 0.414 MTIIMRKTLLTLLLLSSIFSLANSSKRRSRSSNNNIDWWCNQTPHPETCKYYTKQTHYNHNKNIKHKSKFREILIHLALERAVIMRNTAREFGQNNSIINKKQKTVSRDCLKLYDNTVFHLNRTFSNLHAKKTCSSFDAQTWLSTAYTNIETCRNGALDLDIPNFITPIMKVNMTEIISNGLFINWEFVKRDGRDRYTDDDTEEAFPRWFSVRERKLLESSRVIKANIVVAKDGSGNFRKVQDAINAAGRRRFKTRFVIHVKRGVYRENIEVGKMNDNVMLVGDGSRITVITSNRNVKAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYRCAFKGYQDTLMVHAQRQFFRECYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFKPVVGRFNTFLGRPWQRYSRVVVMKSFMDNLISPMGWSPWGGTNFAQSTLFYGEYNNIGPGSSTRNRVRWPGYHVMKSPAQAIPFTVNNLLAGATWLPSTGVPFTSGL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g05025 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 185 IPR035513 -
Vivi7g05025 540 Pfam Pectinesterase 227 525 IPR000070 GO:0030599|GO:0042545
Vivi7g05025 540 Gene3D - 221 540 IPR012334 -
Vivi7g05025 540 PANTHER PECTINESTERASE 15 530 - -
Vivi7g05025 540 CDD PMEI-like_3 38 185 - -
Vivi7g05025 540 SMART PMEI_2 31 184 IPR006501 GO:0004857
Vivi7g05025 540 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Vivi7g05025 540 SUPERFAMILY Pectin lyase-like 223 539 IPR011050 -
Vivi7g05025 540 NCBIfam pectinesterase inhibitor domain 8 171 IPR006501 GO:0004857
Vivi7g05025 540 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857
Vivi7g05025 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 187 IPR035513 -
Vivi7g05025 540 FunFam Pectinesterase 221 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g05025 Vivi-Chr7 135197834 135200352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g05025 31 540 Carbohydrate Esterase AT3G47400 57.390 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g05025 K01051 - gmx:100807908 819.69