Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g05013 ATGGCTAGAGGGAAGGTGAAACTAGCATATATAATGAATAACTCAACTAGGAGGGCAACATTCAGAAAAAGGAAAAGTGGTATTCTAAAGAAGATCAATGAACTCAGCACCCTTTGCGGGATAGATGCATGCGCAATCATCTATGGAGAAAACTATCCTCAAGCAGAAGTCTGGCCATCTAGGCTTGGAGTAAGAAGTGTATTGTACAGGTTCATGAGATTGCCTGAACTTGAACGAAGCAGAAAGATGGTAGATTTAGAAGGCTTCTTGTCAGAGAGCATTATGAAAGCTCAAGATCTGTTGAAAAAACAAATCGAGGAAAACCAAAAGAAGGAAATGACTTATCTTATTAGTCAATTTTTGCATACCGGTGAATATGGCATGGAAAATATGAGCTCGACTAAGGTTACTAGCCTAGCAGCCTTTATTGACAAGAGTCTGAAGGAAGTTGAGCAGAGATTGGATTCAATGGATGTCCATGACGAGGAGGTTGCAAATGGTGCTAGAGCTGTTAACGAAGGAGATATGCTGGCTAATATGGATCATGCTACTATCCAAGGTTTGGAGACGAGCATTAATTATGGTATGCATAGTGATGATCGATTTTCTATCAACTTCTCTGAGCCACCATTTAACGAGGTTAATTTCAACCCAAATGGATTTTGA 666 0.3979 MARGKVKLAYIMNNSTRRATFRKRKSGILKKINELSTLCGIDACAIIYGENYPQAEVWPSRLGVRSVLYRFMRLPELERSRKMVDLEGFLSESIMKAQDLLKKQIEENQKKEMTYLISQFLHTGEYGMENMSSTKVTSLAAFIDKSLKEVEQRLDSMDVHDEEVANGARAVNEGDMLANMDHATIQGLETSINYGMHSDDRFSINFSEPPFNEVNFNPNGF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g05013 221 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi7g05013 221 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vivi7g05013 221 Coils Coil 94 114 - -
Vivi7g05013 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi7g05013 221 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi7g05013 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi7g05013 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi7g05013 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi7g05013 221 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Vivi7g05013 221 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vivi7g05013 221 PANTHER MADS BOX PROTEIN 3 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g05013 Vivi-Chr7 134564883 134566918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g05013 1 209 Type I MADS-box Gene Family AT5G48670 40.187 6.26e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi7g05013 SRF-TF 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g05013 - - cam:101511888 234.572