Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04950 ATGGATTTTCAAACATCAATCAATTGGTTCCAGATGAATCCCATCGGAAGCCTCCCTGTTTTCCAAAACGGGTTTCACACCATTTACAAGACTATTGATATAATTGAGCACGATGACGACGATGAGGACGAATATAATGATGAAGAATCTGAGGAGGATAGGACGAGACAGAAAAGAAGGGAGTATCAAACAGAATCGGTGTTCGTCGGAAAAATGGTTAACACAAAGTTTCACCAATACCAGGTCGTCGGAAGGGGTCTTCCCACCAAAACCGATGAGCACCCGGAGATTTACTGCATGAAGCTTTGGGCTACCAATGAGGTTCATGCCAAATCCAAATTTTCCAAACCGATGAGAAGGTACTGA 366 0.4317 MDFQTSINWFQMNPIGSLPVFQNGFHTIYKTIDIIEHDDDDEDEYNDEESEEDRTRQKRREYQTESVFVGKMVNTKFHQYQVVGRGLPTKTDEHPEIYCMKLWATNEVHAKSKFSKPMRRY 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04950 121 MobiDBLite consensus disorder prediction 38 61 - -
Vivi7g04950 121 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 78 117 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vivi7g04950 121 PANTHER 60S RIBOSOMAL PROTEIN L18A 71 114 IPR028877 -
Vivi7g04950 121 Gene3D - 67 121 - -
Vivi7g04950 121 Coils Coil 45 65 - -
Vivi7g04950 121 Hamap 50S ribosomal protein L18Ae [rpl18a]. 77 117 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04950 Vivi-Chr7 130484074 130486242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04950 72 120 Cytoplasmic Ribosomal Protein Gene Family AT3G14600 67.347 2.15e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04950 K02882 - sind:105156627 80.4925