Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04890 ATGTCAACCTCTTCAACATTCTTCATAATTCCCTTTCTCTCCCTTTTCCTTCTCTCACCTTTACTCCTTCAAGCTACTGAAGCACCTTCTCCTTCACCTTCTCCTTCTACTTCTTCCTCCAATGCATGCAAATCAACACTATACCCTAAACTATGTCGTTCGATTCTCTCCTCGATCCGATCCTCTCCGACCGACCCCTACCACTTAGGAAAATTCTCAATAAAACAAAGCCTCAAACAAGCCAAAAAACTCTCAAAAGTATTCCAAGACTTCCTCCAAAAACACCACCAATCATCTTCCCTAAACCACGCCGAGTTCGCGGCCCTAGACGATTGTCGCGAACTAAACCAACTCAATGTAGACTACTTAGAGTTAGTACAAGACGAACTAAAATCAGCTGATTCATCAGCTTTCAATAACACAGATGTTTTAGTGGAAAAAGTTGAAACTTATCTTAGTGCTGTGGCTACAAACCATTATACTTGTTACGACGGTTTGGTTGTGACCAAAAGTAATATTGCTAATTCGTTTGCTGTTCCTTTGAGTAATGTTACGCAATTGTATAGTGTTTCACTTGGATTGGCTATGCAGGCTTTGAATAAAAATATTAAGCAACGTAAGACTCGTAAACATGGTCTTCCTACTGAGACTTTTAAGGTCAGACAGCCACTTAAGAAGTTGATTAAGCTTCTTAGAACAAAATTCAGTTGCAACAAATCATCCAACTGTACCAGAACTGAAAGGATTCTTCAAGAAAGTGAAAACAAAGGAATTCTACTCAAAGAATTTGTTATTGTAAGCCTTGATGGAACAGAAAATTTTACTTCAATTGGAGAAGCTATTGATGCTACACCTAATAAATTAAAGCCAGAAGATGGCTATTTTCTTATCTATGTCAAACAAGGATTATATCAAGAATATATCACTATACCAAAAAATAAGAAGAATATCTTACTTATTGGTGATGGTATTAACATTACTTGCATCACAGGAAATCATAGTGTGGTAGATGGTTGGACAACTTTTAATTCTTCAACCTTTGCTGTGTCTGGAGAGAGATTTATAGCAATAGACATAACATTCAGAAACACAGCAGGACCAGAAAAACATCAAGCAGTAGCAGTACGAAACAACGCGGATCTATCAATATTTTACCGATGCAGTTTCGAAGGATACCAAGACACACTCTATGTTCACTCACTAAGACAATTCTATAGAGAATGTGACATCTACGGAACAGTTGATTTCATCTTCGGAAACGCGGCTGCAGTACTTCAAAGTTGTAACATTTATGCAAGGAAACCGATGCAAAATCAGAAAAACGCTATAACGGCACAAGGGCGAACTGATCCAAATCAAAACACAGGAATCTCAATACAAAATTGCAGGATTGACGCGGCACCAGACTTAGCCGAAGATATGAATTCGACGCAGAATTATCTGGGAAGACCATGGAAAGTTTATTCAAGGACTGTTTATTTGCAGTCATATATTGGTGATTTGATTCAACCTTCTGGATGGTTAGAGTGGAATGGAACAGTTGGATTGGATACACTGTTTTATGGTGAGTTTGATAATCATGGACCTGGTTCTATAACTAATAATAGGGTTCAATGGCATGGTTATAATTTGTTGACTGCTAATCAAGCTTGGAATTTCACTGTCCTTAATTTTACTTTGGGAAATACTTGGCTTCCTGATACTGATGTACCTTACACTGAAGGATTAGATAATTGA 1737 0.3771 MSTSSTFFIIPFLSLFLLSPLLLQATEAPSPSPSPSTSSSNACKSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKKLSKVFQDFLQKHHQSSSLNHAEFAALDDCRELNQLNVDYLELVQDELKSADSSAFNNTDVLVEKVETYLSAVATNHYTCYDGLVVTKSNIANSFAVPLSNVTQLYSVSLGLAMQALNKNIKQRKTRKHGLPTETFKVRQPLKKLIKLLRTKFSCNKSSNCTRTERILQESENKGILLKEFVIVSLDGTENFTSIGEAIDATPNKLKPEDGYFLIYVKQGLYQEYITIPKNKKNILLIGDGINITCITGNHSVVDGWTTFNSSTFAVSGERFIAIDITFRNTAGPEKHQAVAVRNNADLSIFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVLQSCNIYARKPMQNQKNAITAQGRTDPNQNTGISIQNCRIDAAPDLAEDMNSTQNYLGRPWKVYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFDNHGPGSITNNRVQWHGYNLLTANQAWNFTVLNFTLGNTWLPDTDVPYTEGLDN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04890 578 SMART PMEI_2 34 194 IPR006501 GO:0004857
Vivi7g04890 578 NCBIfam pectinesterase inhibitor domain 14 194 IPR006501 GO:0004857
Vivi7g04890 578 SUPERFAMILY Pectin lyase-like 261 575 IPR011050 -
Vivi7g04890 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 194 IPR035513 -
Vivi7g04890 578 PANTHER PECTINESTERASE 18 568 - -
Vivi7g04890 578 Pfam Plant invertase/pectin methylesterase inhibitor 41 193 IPR006501 GO:0004857
Vivi7g04890 578 Pfam Pectinesterase 264 561 IPR000070 GO:0030599|GO:0042545
Vivi7g04890 578 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Vivi7g04890 578 Gene3D - 259 576 IPR012334 -
Vivi7g04890 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 197 IPR035513 -
Vivi7g04890 578 CDD PMEI-like_3 42 203 - -
Vivi7g04890 578 FunFam Pectinesterase 258 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04890 Vivi-Chr7 127602778 127606244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04890 42 576 Carbohydrate Esterase AT3G10720 61.070 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04890 K01051 - gmx:100816503 880.167