Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04889 ATGTCTTCCTTTAAAGCCTATGGTAAAGTCGACGAAACCGACCAAGCCATATTCGAAGTTCGAAGGAGATCGCGAAGGCGAATAACCATCATAAGCCTATCCACAATTGTCCTAGTTGGTATTGTATTTGCAGCGGTTTTCGGAACCGTTGCTCACAATAATGCTCGTAACAATGACAACAACGATAACAATGATCAATCTCTTTCGAGTGCTGTGAAGGCTATTTGTGATGTTACATTGTACAAGGATTCATGTGAGAGCACTCTTAGTCCTCTTGTTCATTCGGGTCAGCAAATTCGACCTGAGGAGTTGTTCAAGTTGTCGATACAAGTGGCGTTAACCGCGGTTTCGAGAGGTGTTGAGTATTTCTCTGAGCATGGAGCTTTTGATGAGTTGAACTTGAATTTGGATAATAGAACAAAGGAAGCTTTGGTGAATTGTAAGGATCTTTTGGACCTTGCTGTTGATCATTTGAATAGCTCTTTGGCTTATGGGGGAAAGTCTTCTTTGGTTGATGTTTTGGATGATCTTGAAACATGGTTGAGTGCTTCAGGTACTTACCAGCAAACATGCATTGATGGTTTAGAAGAGGCAGAAGAAGCATTAAAATTAAATATTACAACCAATCTCAAAAACTCCACAGAACTCACAAGCAACAGTCTTGCTATCATCACATGGCTTAACAAGGCTGCATCGTCGGTTAACTTTCGACGACGCTTACTGAGTTTATCTATCCAGAATGAACCACCAAACTGGCTTCATCTTAATGACAGAAGAAAGCTACTTCAAGCAGACAATGACTTGAAGAAGAAAGCCGACATTGTTGTCGCGAGAGACGGGAGTGGAAAATACAAAACTATTTCAGAAGCATTAAAACATGTAAGTGATAAAAGTGACAAGAGGACTGTGATCTATGTGAAGAAAGGGACTTATTATGAAAATGTTAGAGTGGAGAAAACTAAATGGAATGTCATGATTATTGGTGATGGTATGAATGTTACAACTATTTCTAGTAGCCTTAATTTTGTGGATGGCACACCTACATTTTCATCAGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATTGGTTTCAAGAACACAGCAGGTCCAGAAAAACACCAAGCAGTAGCGCTAATGACAAGCGCGGATCAAGCAGTTTTCTACAAATGTTCCATTGATGCATATCAAGACACACTCTACGTCCACTCGAATCGTCAATTCTACCGAGAATGCAACATATACGGAACAGTCGATTTCATATTCGGAAACTCCGCTACTGTACTACAAAACTGCAACATTTTACCAAAAAAACCAATGCAAGGACAACAGAACACAATAACAGCACAAGGCAAAACTGATCCTAACATGAACACAGGACTTTCGATTCAAAATTGCAACGTTTCGCCTTTTGGAGACTTGAGTTCTGTTCAAACATATTTAGGCAGACCTTGGAAGAATTACTCAACAACAGTATTTATGCAATCAAACTTGGGAAGTTTTATTAGTCCAAATGGATGGTTACCTTGGATCGGAGATTCTGCACCGGATACTATATTCTATGCTGAATTTCAGAATTTTGGAGCTGGTGCTTCAACAAAGAATAGGGTCAAGTGGAAAGGTTTGAAAAGTATTACAAATAAACAAGCTAAAAAGTTTACTGTTAAGTCTTTTCTTAGTGGAGATAAATGGATTCCTGCTTCTGGTGCAACATTTAAATCTTCTCTGTAA 1740 0.3914 MSSFKAYGKVDETDQAIFEVRRRSRRRITIISLSTIVLVGIVFAAVFGTVAHNNARNNDNNDNNDQSLSSAVKAICDVTLYKDSCESTLSPLVHSGQQIRPEELFKLSIQVALTAVSRGVEYFSEHGAFDELNLNLDNRTKEALVNCKDLLDLAVDHLNSSLAYGGKSSLVDVLDDLETWLSASGTYQQTCIDGLEEAEEALKLNITTNLKNSTELTSNSLAIITWLNKAASSVNFRRRLLSLSIQNEPPNWLHLNDRRKLLQADNDLKKKADIVVARDGSGKYKTISEALKHVSDKSDKRTVIYVKKGTYYENVRVEKTKWNVMIIGDGMNVTTISSSLNFVDGTPTFSSATFAVFGKNFIARDIGFKNTAGPEKHQAVALMTSADQAVFYKCSIDAYQDTLYVHSNRQFYRECNIYGTVDFIFGNSATVLQNCNILPKKPMQGQQNTITAQGKTDPNMNTGLSIQNCNVSPFGDLSSVQTYLGRPWKNYSTTVFMQSNLGSFISPNGWLPWIGDSAPDTIFYAEFQNFGAGASTKNRVKWKGLKSITNKQAKKFTVKSFLSGDKWIPASGATFKSSL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04889 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 229 IPR035513 -
Vivi7g04889 579 FunFam Pectinesterase 68 228 - -
Vivi7g04889 579 NCBIfam pectinesterase inhibitor domain 41 227 IPR006501 GO:0004857
Vivi7g04889 579 FunFam Pectinesterase 267 579 - -
Vivi7g04889 579 Pfam Pectinesterase 273 565 IPR000070 GO:0030599|GO:0042545
Vivi7g04889 579 SUPERFAMILY Pectin lyase-like 271 575 IPR011050 -
Vivi7g04889 579 CDD PMEI-like_3 74 229 - -
Vivi7g04889 579 SMART PMEI_2 67 223 IPR006501 GO:0004857
Vivi7g04889 579 Pfam Plant invertase/pectin methylesterase inhibitor 71 223 IPR006501 GO:0004857
Vivi7g04889 579 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Vivi7g04889 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 227 IPR035513 -
Vivi7g04889 579 Gene3D - 268 579 IPR012334 -
Vivi7g04889 579 PANTHER PECTINESTERASE 37 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04889 Vivi-Chr7 127599748 127602097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04889 1 579 Carbohydrate Esterase AT3G10710 55.077 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04889 - - gmx:100808802 872.463