Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04880 ATGATGAAACGGATGAAAAAGGAGATTCCGGATGACATGCTCCATGATGATCAGATTGGTTTGCAGTTGAATGATGAGGATAATGGCAGAAGTGCCTGTGGAGTTGTTCTGAAGAAAGGGCCATGGACAAGTGTTGAAGATGATATATTGGTCAAGTATGTCAACAAGAACGGAGAGGGGAATTGGAATGCCGTTCAGAAGCAGACAGGCCTGTTGCGTTGTGGAAAAAGTTGTCGATTGCGATGGGCCAATCACCTAAGGCCACATTTAAAGAAAGGGGCATTTACTGAGGAAGAGGAGCGGTTGATTTGTGAGCTTCATTCAAAAATGGGAAACAGATGGGCACGCATGGCAGTGCATTTACCTGGTCGTACAGACAATGAGATAAAAAACTATTGGAACACTCGGATCAAGAGGCGTACCCGAGCTGGCTTGCCACTTTATCCTCCTGGTGTATATCAAGCGGCTCTTAATAACCAAAGCACCAGTAGAATTAACGGTGGTAATAAAGTGCATTCTGATTTCTTGCATAAAAGGAGTTTTAGTATGCATGATGCAATGTTTGACTGCCTGAAGGATACCCAGGGAATCTCACCTTATTCGCCTGATATTTCTGATTATGGCAATATGCAAAATGGTTTTGATTCTTCTCAGTACTGCAGTTTTGTGTCATCGACATCATCTAACCCTAAACGTTTTCGAGAGTCACCAATACCGTTTCTTGATTTTGGTTGTATTGACAGAAGCGATGTTTATCCATTTGAACATATTCAGGATGATGCTTTTGATAAGTTGACACAATCATTTGGAGTGCAATCACCTCTTGATCCTGGTTTCTTCTCAAACAGCTTAATGTGTTACAGCCATTCACTTAAAAATGGCAATTTCTCTACTTCTATGCCTTTTGAGGCTGTGAAGTCGGAGCTCCCTTCACTCCAATATCCGAAAATTGATTTAGGTAGCCGGGGTACATCTCCCTCACACCCACTACTTGACTCAATTGATGATTTTATCAAGTCTCCTACACCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGCAATCTGTACTTCATCAGCGGAAGACTCCGAGCAGTTCAAAAAACCAATATTATGACAGAAGTTCATATTCATCTGCTGCAACTCCCTGTGAAAGAGATGACCTGTCAGCATGGAGCATGTATGAGCAAGAATGGAAAGACTATGCTGACCCTGTATCTCCATCTGGTGTATCTTCAATATTGAATGATTGCCCTGCTGTTGTTGCCAACATAAATTCAATGGATGAACAGCCACCTGTTCAGACCGACAATGGCAACATTGTGAAATCAGAGTATGTTGATCATGTGTGGTCCCCTGACAGTTCTTATATCAAGTCTCTGTTGAACAATAGTCAGCCAGATTTTGTGCTTGATTCAGGTTGGTATGAGCCGTGTTCTGGGCATGGCAATAACCAAGCCGTTGCCACTGATGCTACATTGATGTTTCAGGAAGATCAATTAGCCACCGACTATAAACATATGACCGCTGCTGGAACTTCTAACCCAAGTCAGGTATGGGAGTTAAGTTCTTTTGGATGGAACAACATGCCTGCTGTCTGTCAAGTATCTGATCTTGGTTAA 1641 0.4241 MMKRMKKEIPDDMLHDDQIGLQLNDEDNGRSACGVVLKKGPWTSVEDDILVKYVNKNGEGNWNAVQKQTGLLRCGKSCRLRWANHLRPHLKKGAFTEEEERLICELHSKMGNRWARMAVHLPGRTDNEIKNYWNTRIKRRTRAGLPLYPPGVYQAALNNQSTSRINGGNKVHSDFLHKRSFSMHDAMFDCLKDTQGISPYSPDISDYGNMQNGFDSSQYCSFVSSTSSNPKRFRESPIPFLDFGCIDRSDVYPFEHIQDDAFDKLTQSFGVQSPLDPGFFSNSLMCYSHSLKNGNFSTSMPFEAVKSELPSLQYPKIDLGSRGTSPSHPLLDSIDDFIKSPTPISTLESDCSSPQNSGLLQSVLHQRKTPSSSKNQYYDRSSYSSAATPCERDDLSAWSMYEQEWKDYADPVSPSGVSSILNDCPAVVANINSMDEQPPVQTDNGNIVKSEYVDHVWSPDSSYIKSLLNNSQPDFVLDSGWYEPCSGHGNNQAVATDATLMFQEDQLATDYKHMTAAGTSNPSQVWELSSFGWNNMPAVCQVSDLG 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04880 546 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Vivi7g04880 546 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 513 - -
Vivi7g04880 546 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Vivi7g04880 546 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Vivi7g04880 546 Gene3D - 36 92 - -
Vivi7g04880 546 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Vivi7g04880 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Vivi7g04880 546 Gene3D - 94 140 - -
Vivi7g04880 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Vivi7g04880 546 SMART sant 38 88 IPR001005 -
Vivi7g04880 546 SMART sant 91 139 IPR001005 -
Vivi7g04880 546 FunFam Transcription factor GAMYB 94 140 - -
Vivi7g04880 546 FunFam MYB-related transcription factor 38 91 - -
Vivi7g04880 546 CDD SANT 41 86 IPR001005 -
Vivi7g04880 546 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Vivi7g04880 546 MobiDBLite consensus disorder prediction 365 388 - -
Vivi7g04880 546 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04880 Vivi-Chr7 127181913 127186404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04880 26 545 MYB Transcription Factor Family AT5G06100 39.299 4.70e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g04880 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04880 K09422 - gmx:100810415 677.167