Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04801 ATGGGGCTATTTAGGACTGTTGTTAAAGAAGCATGGGAGAAAACGTTCTTGTTTACAAAGTTCTTATGCTTTTTACATGTTACCGACAACTATCTGGTTGACCCTGTTAAGATCTATGGTCCTAGCATGCTTCCTGTAATCGATTTGAATCCAAGCATCTTTCTTGCTGAAAGGATAACACCTCGATCTGGTAAAATTACTCACAGAGATATTGTAGTTTTCCGCTCACCTCAAAACCCTAGAAGGACTGTCACAAAGCGTGTGATTGGATTAGAGGGTGATAGCATTACATATGTCTCTAATCCTGAAAACAGCGATAACGATAAGCATGAGACAGTTGTGGTTCCAAAGGGTCACGTTTGGGTACAGGGGGATAACAAATATAACAGCACCGATTCTAGACATTTTGGTCCAATTCCCTATGGCCTTATTGAGAGTAAGATATTCTGGAAGGTATTTCCACTTAGTGATTTTGGATCGTTCTGGAGAAAATGA 495 0.4 MGLFRTVVKEAWEKTFLFTKFLCFLHVTDNYLVDPVKIYGPSMLPVIDLNPSIFLAERITPRSGKITHRDIVVFRSPQNPRRTVTKRVIGLEGDSITYVSNPENSDNDKHETVVVPKGHVWVQGDNKYNSTDSRHFGPIPYGLIESKIFWKVFPLSDFGSFWRK 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04801 164 PRINTS Bacterial leader peptidase 1 (S26A) family signature 31 47 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi7g04801 164 PRINTS Bacterial leader peptidase 1 (S26A) family signature 115 134 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi7g04801 164 PRINTS Bacterial leader peptidase 1 (S26A) family signature 84 96 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi7g04801 164 FunFam Inner membrane protease subunit 1 29 160 - -
Vivi7g04801 164 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 161 - -
Vivi7g04801 164 Gene3D Umud Fragment, subunit A 29 163 - -
Vivi7g04801 164 Pfam Signal peptidase, peptidase S26 20 99 IPR019533 GO:0004252|GO:0006465
Vivi7g04801 164 Pfam Signal peptidase, peptidase S26 109 149 IPR019533 GO:0004252|GO:0006465
Vivi7g04801 164 NCBIfam signal peptidase I 18 100 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi7g04801 164 SUPERFAMILY LexA/Signal peptidase 31 162 IPR036286 -
Vivi7g04801 164 ProSitePatterns Signal peptidases I signature 3. 120 133 IPR019758 GO:0004252|GO:0016020
Vivi7g04801 164 CDD S26_SPase_I 35 148 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04801 Vivi-Chr7 123714538 123717204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04801 43 161 MADS-box Gene Family AT1G29960 51.261 1.82e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04801 K09647 - gmx:100805997 204.527