Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04717 ATGCTCATAATCCATTGTCTATTACATAGAAAAAGAGAGAAAGGGTCTCACCTCAATGCAATTCTGATTCTGAAAGCCAAAGTACCCAATAGTTGGAAAACCAGTGAAAGAATGCCAGGGAAACCTGAAACTGATGAATGTGGAGTAAAGCATAGTGAGCATGTTTCCATTTATTCTCATCACCCTTGGTGGCTTGAAAATGCCTCCAAATCATCTTCACTTGATCAGCTCAATTGTTCAATCATGAATTTAGAAGCCTTGGTTTCTCCTTCAGTCTCAGGTGGGGACGTTGCCAAGGAACACCGAAACATCAAACATTACCAATCCTCAACTCCATTTACCATGGACAAACACCTTGATCCAAATTCGCAGACGGAACTCGTTGGTCATTCAACTGTTTTAACATCGCCGTATTCACATCCACAATTCGGTCAATTCTTGACTACTTACGGACAACCAGCTATGATGAACCCTCAGCTATACCACATGCATCATACTAGAGTGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCGCGCGCCAAGGCCGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCGTATCTTCACGAATCCCGTCACCTACACGCTTTGAGAAGGGCGAGAGGGAACGGCGGTCGCTTTCTCAATACAAAGAAGCTCGAACACGATTCTAATGCCGCGATAGAAAAAGGAAACGATACCGGTGCAATGTTGGTTACCAACAAAGAGAATCAAGGCTCGTCGAATGCGTTACCGTCCGTGCAAAAATTACAGGGCTTCGATATTGGTTACCATGATGGAAATGGCTTTACAGGAGTATGTCATTCACAGGCAAATGGTAAACAGGAGGGTGATTTCTTTGGTAAAGAGAGGGACTCAAGTGGTGCTATTAAATGA 951 0.4311 MLIIHCLLHRKREKGSHLNAILILKAKVPNSWKTSERMPGKPETDECGVKHSEHVSIYSHHPWWLENASKSSSLDQLNCSIMNLEALVSPSVSGGDVAKEHRNIKHYQSSTPFTMDKHLDPNSQTELVGHSTVLTSPYSHPQFGQFLTTYGQPAMMNPQLYHMHHTRVLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGNGGRFLNTKKLEHDSNAAIEKGNDTGAMLVTNKENQGSSNALPSVQKLQGFDIGYHDGNGFTGVCHSQANGKQEGDFFGKERDSSGAIK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04717 316 ProSitePatterns NF-YA/HAP2 subunit signature. 180 200 IPR018362 GO:0003677|GO:0016602
Vivi7g04717 316 Gene3D - 175 236 - -
Vivi7g04717 316 PRINTS CCAAT-binding transcription factor subunit B signature 178 200 IPR001289 GO:0003700|GO:0006355
Vivi7g04717 316 PRINTS CCAAT-binding transcription factor subunit B signature 209 232 IPR001289 GO:0003700|GO:0006355
Vivi7g04717 316 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 71 271 IPR001289 GO:0003700|GO:0006355
Vivi7g04717 316 SMART cbf3 174 235 IPR001289 GO:0003700|GO:0006355
Vivi7g04717 316 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 177 232 IPR001289 GO:0003700|GO:0006355
Vivi7g04717 316 ProSiteProfiles NF-YA/HAP2 family profile. 175 235 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04717 Vivi-Chr7 120549166 120551695 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04717 39 254 CCAAT-HAP2 Transcription Factor Family AT5G12840 39.271 9.74e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vivi7g04717 CBFB_NFYA 9.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04717 K08064 - gmx:100782085 360.147