Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04678 ATGAGTATTGTGTATACTCATGCTCTCAACTATTCTCAACTTGAGTCAAGGAAGGATATGGAAATGGATTCAGAAATTTGTTACTCACAAACACAACAATATTGTCCCCAAAACAGTTCAGGTTTATCGCGATACTCTTCTTCTCCAAGTTCATTGCTTACAAGCATTGGTTTTATGAATGAAGAATCTTTTGGAAATGATAATCACCGATATCAGAAACATTATTCTCCCTCCACAAGCTCAGAAATGGAAACAATGTTTATAAATTCTCAACATCTGCCAGTGAAACAAGAAGAAAATGACTCTTTTTCACAAGGATTACAATACAATGGTTACTCTTATTATGAATCTCCAAATCAGATGATTTACCAAAATCAGCAGCAGAATCAAGGATTGCCTAATGTTTTTGATCATTCAGAGAATTATATCAAAGAAACTAACATTGGTTCTTCTAAGAATTGCTCTAATAATCTCATTAGGCACAAGAGTTCACCTGCTGAGTTTTTCTCCAATTATTCACTTCATAATGGTACTATGAATTTCTCATCCACACAATCCTCTTGCTCTATCAGCATGCCACAAATTGTTGAAAATGATGAACAAGAAGCACTTCAACCAAATTGTATTAAAAATAAAAACATTGGAAAATATTACATGCCTAGCTTCGAATTCACTAGTGACTGTTGGGATAGTTCTACATTCAATGTTCCAAAAACATCCACAATGAATGGTGAAATCATGTTTTCCACTTCAAATGCTTTGGAAACTCAGGATTTAGACTTTGGATACCAAAAACTTGGTTTGAGCCACCATTTGAGTCTGCCAAGCTCTTGTACAAAGATGACTAGTATGGACAAGTATTTTCACATTCAAGGATCTATTCCATGTAAAATTCGTGCCAAAAGAGGATTTGCCACTCACCCGAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAGAATCAAGAAACTGCAAGATCTTTTCCCGAATTCAGATAAGCAAACTAGCACAGCTGATATGTTGGATGTAGCAGTTGACTACATTAAAGACCTCAGGAAACAGCTTAAGATATTATCAGACACAAAGGCAAAGTGCAGTTGTACAAGTAATTAG 1122 0.3529 MSIVYTHALNYSQLESRKDMEMDSEICYSQTQQYCPQNSSGLSRYSSSPSSLLTSIGFMNEESFGNDNHRYQKHYSPSTSSEMETMFINSQHLPVKQEENDSFSQGLQYNGYSYYESPNQMIYQNQQQNQGLPNVFDHSENYIKETNIGSSKNCSNNLIRHKSSPAEFFSNYSLHNGTMNFSSTQSSCSISMPQIVENDEQEALQPNCIKNKNIGKYYMPSFEFTSDCWDSSTFNVPKTSTMNGEIMFSTSNALETQDLDFGYQKLGLSHHLSLPSSCTKMTSMDKYFHIQGSIPCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNSDKQTSTADMLDVAVDYIKDLRKQLKILSDTKAKCSCTSN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04678 373 SMART finulus 310 360 IPR011598 GO:0046983
Vivi7g04678 373 Gene3D - 306 372 IPR036638 GO:0046983
Vivi7g04678 373 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 368 - -
Vivi7g04678 373 FunFam Transcription factor bHLH130 family 305 373 - -
Vivi7g04678 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 354 IPR011598 GO:0046983
Vivi7g04678 373 Pfam Helix-loop-helix DNA-binding domain 310 354 IPR011598 GO:0046983
Vivi7g04678 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 368 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04678 Vivi-Chr7 119285900 119288224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04678 39 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.659 4.67e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g04678 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04678 - - psat:127075773 464.536