Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04675 ATGCTTTCACAAGAAATCACAGAAACTAATATTGGTTCTTCTAAGAATTGCTCCAATATCATTAGGCACAACAGTTCACCTGCTGAGTTTTTCTCCAATTATTCACATCATAATGATACTATGAATTTCTCATATAGACAATCCTCTTGCACTGTCAACATGCCACAAATTGTTGAAAATGGTCAACATGAAGCACGTAAAAACATTGGAAAATGTTACATGCCTAGCTTTACCAATGAATATTTGGCTACTTCTACATTCAGTGCCCCAAAAACATCTACAAATAATGGTGAAATCATGTTTTCCACTTCAAATGCTTTGGAAACTCAGGATTTAGACTTTGGATTCCAAAAACTTGGTTTGAGCCACCATTCGAGTCTACCAAGCTCTTCTAATAAGATGACTAGTATGGAGAAGTTTCTTCACATTCAAGGAACTGTTACATGTAAAATTCGTGCCAAAAGAGGATTTGCAACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTACAAGAATAAAAAAATTGCAAGAGCTTTTCCCAAATTCAGATAAGCAAACAAGCACAGCTGATATGTTGGATGTTGCAGTTGACTACATTAAAGATCTCAGGAAACAACTTAAGTCCATAGACAATATAACTTGGAAACCTGTCATTAAAGGTTGGAGAAATCCTGAGATTACTTTTCAAGATGGTACAACAAGTTTGAAGCCTGATTGGTCCAAAGATAAATGTGAAGTAGTTCTTGCAAATGAAAAAGCTTTGAATACTATATTCACTAGTGTTGACAAAAACATGTTCAAACTAATCAACACTTGTATTGAAGCTAAAGAGACTCGAGAGATTCTCAAGACTTCTCATTATGGCACATCCAAAGTGTGCATGTCAAGGTTGCAGCTTCTCACTACACAGTTTGAGAATTTGTGA 939 0.3557 MLSQEITETNIGSSKNCSNIIRHNSSPAEFFSNYSHHNDTMNFSYRQSSCTVNMPQIVENGQHEARKNIGKCYMPSFTNEYLATSTFSAPKTSTNNGEIMFSTSNALETQDLDFGFQKLGLSHHSSLPSSSNKMTSMEKFLHIQGTVTCKIRAKRGFATHPRSIAERERRIRISTRIKKLQELFPNSDKQTSTADMLDVAVDYIKDLRKQLKSIDNITWKPVIKGWRNPEITFQDGTTSLKPDWSKDKCEVVLANEKALNTIFTSVDKNMFKLINTCIEAKETREILKTSHYGTSKVCMSRLQLLTTQFENL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04675 312 Gene3D - 154 217 IPR036638 GO:0046983
Vivi7g04675 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 214 IPR036638 GO:0046983
Vivi7g04675 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 212 - -
Vivi7g04675 312 Pfam Helix-loop-helix DNA-binding domain 163 207 IPR011598 GO:0046983
Vivi7g04675 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Vivi7g04675 312 SMART finulus 163 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04675 Vivi-Chr7 119135371 119150753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04675 18 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.081 1.84e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g04675 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04675 - - psat:127075773 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06647 3 186149419 186152711 Vivi7g04675 7 119135371 119150753 ECH
Vivi7g04675 7 119135371 119150753 Vivi7g04675 7 119135371 119150753 ECH