Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04666 ATGTCGCATACAGAGTATAGCAGAGAGAGGAGCGTCTGCGCTGAAGGTTGCATCCCACAAGTTAAAGTTGAAGAACTTCCCCCTGAGTTTGATACCTTCACAGATTGTAGCAACCCCTTGAAGACCATTACTGTTAGTCAATCCGGCAACGCAAATTTCAAAACAATTCAAAGTGCAATTGATTCTGTCCAGGGAGGGAACTCTCAATGGATTCACATTCAAATTTCCTCTGGTGTTTACAAAGAGCAAGTCTTGATTCCAAAGAACAAACCATGCATTTATCTTGAAGGAGCTGGTAGTGATTCCACAAGTATAGAATGGGGCTCTCATGACATTGCTACTTTCTTATCAAAAGGAGATAATACAGTCGCAAAGGGCATTACTTTTACGAATACACTGAACAGCCCAGTATTATTAGATGCCACTAAGGTCACACAAGCCAGAGCTGCTAAATTCCGCGGAGATAAATGTGCTTTCTACAGCTGTAGTTTTCTTGGAGTGCAAGATACTCTAAATGATGACTACGGTCGTCATTACTACAAAAATTGTTACATCCAAGGTGCAGTCGATTTCATATATGGGCAAGGTCAATCACTCTTTGAGGCAAGTACGATATATTTCTCACCGGGGAAATCTGGTCTAAAAGAGGATGGAGTTATTACAGCACAATATAGAAATTCACCAAATGATCCAAGTGGATTTGTGTTTAATAAATGTAACATAAGTGGGACAGGAGGGAAGTTTCAACTTGGAAGGGCTATGGACGCTTACGCAAGAGTGATCATAGCAAATTCTTACCTATCAGATGGTGTTAGACCTGAGGGTTGGAGTCAGACAACATATGTTGGACATGAATCAAACCTTACTTTTGTGGAGGAGGGATGCACGGGACCTGGAGCAGACAAATCAAAACGTGTAAAATGGATGAAGAATTTGAGTCGACCTGAACTTGATAAATTCTTGAGTAACTCTTTTATTGATCAAGAAGGGTGGATTTCCAAATTGCCAGTGATACTTTGA 1020 0.4069 MSHTEYSRERSVCAEGCIPQVKVEELPPEFDTFTDCSNPLKTITVSQSGNANFKTIQSAIDSVQGGNSQWIHIQISSGVYKEQVLIPKNKPCIYLEGAGSDSTSIEWGSHDIATFLSKGDNTVAKGITFTNTLNSPVLLDATKVTQARAAKFRGDKCAFYSCSFLGVQDTLNDDYGRHYYKNCYIQGAVDFIYGQGQSLFEASTIYFSPGKSGLKEDGVITAQYRNSPNDPSGFVFNKCNISGTGGKFQLGRAMDAYARVIIANSYLSDGVRPEGWSQTTYVGHESNLTFVEEGCTGPGADKSKRVKWMKNLSRPELDKFLSNSFIDQEGWISKLPVIL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04666 339 Gene3D - 37 338 IPR012334 -
Vivi7g04666 339 SUPERFAMILY Pectin lyase-like 41 335 IPR011050 -
Vivi7g04666 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 333 - -
Vivi7g04666 339 FunFam Pectinesterase 37 336 - -
Vivi7g04666 339 Pfam Pectinesterase 43 328 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04666 Vivi-Chr7 118967617 118973032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04666 31 332 Carbohydrate Esterase AT1G05310 38.750 6.65e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04666 - - mtr:25501033 478.789