Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04600 ATGGGAAGAGGAAGAGTTGAATTGAAGAGGATAGAGAACAAAATAAACAGACAAGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAACTATCTGTTCTATGTGATGCTGAAGTTGCCCTCATCATTTTCTCTAGCCGTGGGAAACTCTATGAATTTGGAAGTGTTGGCACTACCAAAACTATTGAGAGATACCAACGCTGCTCTTTCAATCCTCAACAAGATGATCACCAAATCGATTGCGAAACACAGAGTTGGTTCCATGAAGTGTCTAAGCTGAAAGCAAAATATGAGTCTCTTCAAAGGACTCAGAGGCAGTTGCTTGGAGAAGATCTTGGACCTTTGAACATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGTGCTTTAGCACAAGCTAGACAAAGAAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGAAAAAGGGAACGCCATCTAGGTGACATGAACAAGCAACTAAGACTCAAGCTTGAAGGAGAAGGGTTTAATCTTAAAGCAATGGAAAGCTTGTGGAGCTCAAACTCAGTTGCTGGAAGTAGCAACTTTACATTTCAGCAACCTCAATCAAACCAACCCCATGTCTATGACTATGGATATCCAGCAGAACCCTTTTTGCAAATAGGATACCAACAATATGTTCAAGCTGAAGCATCCAACGTTTCCAAGAACATGGCTTGTGAGACTAACTTCATGCAGGGATTTTTCCTTTGA 753 0.4011 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDHQIDCETQSWFHEVSKLKAKYESLQRTQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKRERHLGDMNKQLRLKLEGEGFNLKAMESLWSSNSVAGSSNFTFQQPQSNQPHVYDYGYPAEPFLQIGYQQYVQAEASNVSKNMACETNFMQGFFL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04600 250 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Vivi7g04600 250 FunFam MADS-box transcription factor 1 13 84 - -
Vivi7g04600 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi7g04600 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi7g04600 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi7g04600 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi7g04600 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Vivi7g04600 250 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vivi7g04600 250 Coils Coil 121 144 - -
Vivi7g04600 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04600 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04600 250 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04600 250 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04600 250 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vivi7g04600 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi7g04600 250 Coils Coil 94 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04600 Vivi-Chr7 117553569 117557245 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04600 1 250 MADS-box Gene Family AT2G45650 65.490 6.41e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi7g04600 K-box 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04600 K09264 - gmx:100820061 408.297