Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04598 ATGGGAAGAGGAAAGACAGAATTGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAATTATCAATTTTGTGTGATGCTGAAGTTGCTCTTATTGTTTTTTCAACAAGAGGGAGAATTTATGAATTTGCTAGTTCAAGCATTCTAGAAACAATTGAACGATACCGCAGTCGTAGCCGGATTAATAATACTCCAACAGCATCTGAATCTGCAGAAAAAACTCAGCGTTTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGATCTTCTTGAGTCTTCAAAACGAAAATTCTTAGGAGAAGGTTTAGGGACTTGTTCCATTGATGAACTACAAAGGATAGAGCAACAGATGGAGAAGAGTATAACCAATATTCGAGAAAAAAAAGCTGAGGTTTTCAGAGAACAAATTGAACTGCTAAAAGAAAATGAAAAAACCCTAGTTGCTGAAAATACCAAGCTCTCTGAGAAGTATGATAGTTATTCATCACAGCAAGCAAAAAAGGATGATAGAGAAAATGTAGGGGAGGTTAAAGCTTATGCAGATCAAAGTAGTCCAAATTCAGATGTGGAGACTGAATTATTCATTGGTCTTCCAGAAACAAGAACAAGGCAAATTTCTCCAAAATTGAGGACTAATTAA 684 0.3538 MGRGKTELKRIENATSRQVTFSKRRNGLMKKAFELSILCDAEVALIVFSTRGRIYEFASSSILETIERYRSRSRINNTPTASESAEKTQRLKEEAENMMKKIDLLESSKRKFLGEGLGTCSIDELQRIEQQMEKSITNIREKKAEVFREQIELLKENEKTLVAENTKLSEKYDSYSSQQAKKDDRENVGEVKAYADQSSPNSDVETELFIGLPETRTRQISPKLRTN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04598 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04598 227 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04598 227 MobiDBLite consensus disorder prediction 176 191 - -
Vivi7g04598 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Vivi7g04598 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi7g04598 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi7g04598 227 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Vivi7g04598 227 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Vivi7g04598 227 Coils Coil 122 171 - -
Vivi7g04598 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04598 227 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Vivi7g04598 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi7g04598 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi7g04598 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi7g04598 227 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Vivi7g04598 227 MobiDBLite consensus disorder prediction 173 208 - -
Vivi7g04598 227 Coils Coil 81 108 - -
Vivi7g04598 227 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04598 Vivi-Chr7 117476158 117489178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04598 1 159 MADS-box Gene Family AT2G45660 65.217 7.31e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi7g04598 K-box 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04598 - - vvo:131620066 297.745