Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04597 ATGGTGAGAGGGAAGACGCAGATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACGTTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCATTTGAGTTATCAATTTTGTGTGATGCTGAAGTTGCTCTTATTGTTTTTTCACCAAGAGGAAGAATTTATGAATTTGCTAGTTCAAGCATTCTAGACACAATTGAACGATACCGCAGTCAAAGACGGATTAACAATACTCCAACAGCATCTGAATCTGCTGAAAATACTCAGCGTTTGAAGGAAGAAGCAGAAAACATGATGAGAAAGATTGATCTTCTTGAGACATCAAAACGAAAATTCTTAGGAGAAGGTTTAGGGACTTGTTCCGTTGATGAACTACAAAGGATAGAGCAACAGTTGGAGAACAGTATAACCAATATTCGAGCAAAAAAGGCTGAGGTTTTCAGGGAACAAATTGATCAGTTAAAAGAAAAGGAAAAAACCCTAGTTGCTGAAAATACCAGACTCTCTGAGAAGTATGGTAGTTATTCATTAAAGGCAGCAAAAAACAATGAAAAAGAAAATATAGGTGAAGGTGAAGCTTATGCAGATCAAAGTGGTCCAAATTCAGATGTGGAGACTGAGTTGTTCATTGGTCTTCCAGAAACAAGAACAAGAAGAATTTCTTCAAAGTTAAGGAATAATTAA 684 0.364 MVRGKTQMKRIENATSRQVTFSKRRNGLMKKAFELSILCDAEVALIVFSPRGRIYEFASSSILDTIERYRSQRRINNTPTASESAENTQRLKEEAENMMRKIDLLETSKRKFLGEGLGTCSVDELQRIEQQLENSITNIRAKKAEVFREQIDQLKEKEKTLVAENTRLSEKYGSYSLKAAKNNEKENIGEGEAYADQSGPNSDVETELFIGLPETRTRRISSKLRNN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04597 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04597 227 MobiDBLite consensus disorder prediction 183 210 - -
Vivi7g04597 227 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04597 227 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Vivi7g04597 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi7g04597 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi7g04597 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi7g04597 227 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Vivi7g04597 227 Coils Coil 122 171 - -
Vivi7g04597 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04597 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Vivi7g04597 227 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04597 227 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vivi7g04597 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi7g04597 227 FunFam Agamous-like MADS-box protein AGL13 13 80 - -
Vivi7g04597 227 Coils Coil 81 108 - -
Vivi7g04597 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04597 Vivi-Chr7 117421855 117437387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04597 1 159 MADS-box Gene Family AT2G45660 68.944 1.77e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi7g04597 K-box 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04597 - - vvo:131620066 316.62