Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04591 ATGGTGAGAGGGAAGACACAGATGAAGCGTATAGAGAACCCAATAAGTAGACAAGTAACATTTTCAAAGAGAAAAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAGTTTTGTGTGATGCTCAAGTTGCTCTTGTTGTTTTCTCACCAAGAGGAAGACTTTATGAATTTGCTAGCTCAAGCATTCTAGAAACAATTGAACGATACCGCAGTCATACAAGGATTAATAATCCTCCAACAACATCTGATTCTGTTGAAAATAATCAGCATTTGAATGAAGAAGCAGAAAACATGATGAAAAAGATTGATCTTCTCGAGACTTCAAAACGGAAACTCTTAGGAGAAGATTTGGGGTCTTGTTCAATTAATGAACTACAAAAGATAGAGCAACAGTTGGAGAAGAGTATAAATAAAATTCGAGCAAAAAAGACTCAGGTCTACAGGGAACAAATAGATCAGCTAAAAAAAAAGGAAAAAGCCCTACTCGCCGAAAATACTAGTCTCTCTGAGAAGTGTGATAGTTATTCATCACAGCAAGCAAAAAAAGATGATAGAGACAATATTGGTGAGGTTGAAGGTATTACTGATCAAAGTAGTCCAAATTCAGATGTGGAGACTGGATTATTCATTGGTCTTCCAGAAACAAGAACGCGGCGAATTTCTCCAAGTTGA 672 0.3631 MVRGKTQMKRIENPISRQVTFSKRKNGLMKKAFELSVLCDAQVALVVFSPRGRLYEFASSSILETIERYRSHTRINNPPTTSDSVENNQHLNEEAENMMKKIDLLETSKRKLLGEDLGSCSINELQKIEQQLEKSINKIRAKKTQVYREQIDQLKKKEKALLAENTSLSEKCDSYSSQQAKKDDRDNIGEVEGITDQSSPNSDVETGLFIGLPETRTRRISPS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04591 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi7g04591 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi7g04591 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi7g04591 223 Coils Coil 88 115 - -
Vivi7g04591 223 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Vivi7g04591 223 MobiDBLite consensus disorder prediction 176 191 - -
Vivi7g04591 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi7g04591 223 Gene3D - 15 94 IPR036879 GO:0003677|GO:0046983
Vivi7g04591 223 MobiDBLite consensus disorder prediction 171 223 - -
Vivi7g04591 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Vivi7g04591 223 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Vivi7g04591 223 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04591 223 Coils Coil 122 171 - -
Vivi7g04591 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04591 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04591 223 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04591 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi7g04591 223 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04591 Vivi-Chr7 117272315 117278725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04591 1 159 MADS-box Gene Family AT2G45660 69.565 2.22e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi7g04591 K-box 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04591 - - vvo:131620066 290.812