Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04590 ATGCAAATTAAGATGGTGAGAGGGAAGACACAGATGAAGCGTATAGAGAACCCAATAAGTAGACAAGTAACATTTTCAAAGAGAAAAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAGTTTTGTGTGATGCTCAAGTTGCTCTTGTTGTTTTCTCACCAAGAGGAAGACTTTATGAATTTGCTAGCTCAAGCATTCTAGAAACAATTGAACGATACCGCAGTCATACAAGGATTAATAATCCTCCAACAACATCTGATTCTGTTGAAAATAATCAGCATTTGAATGAAGAAGCAGAAAACATGATGAAAAAGATTGATCTTCTCGAGACTTCAAAACGGAAACTCTTAGGAGAAGATTTGGGGTCTTGTTCAATTAATGAACTACAAAAGATAGAGCAACAGTTGGAGAAGAGTATAAATAAAATTCGAGCAAAAAAGACTCAGGTCTACAGGGAACAAATAGATCAGCTAAAAAAAAAGGAAAAAGCCCTACTCGCCGAAAATACTAGTCTCTCTGAGAAGTGTGATAGTTATTCATCACAGCAAGCAAAAAAAGATGATAGAGACAATATTGGTGAGGTTGAAGGTATTACTGATCAAAGTAGTCCAAATTCAGATGTGGAGACTGGATTATTCATTGGTCTTCCAGAAACAAGAACGCGGCGAATTTCTCCAAGTTGA 684 0.3611 MQIKMVRGKTQMKRIENPISRQVTFSKRKNGLMKKAFELSVLCDAQVALVVFSPRGRLYEFASSSILETIERYRSHTRINNPPTTSDSVENNQHLNEEAENMMKKIDLLETSKRKLLGEDLGSCSINELQKIEQQLEKSINKIRAKKTQVYREQIDQLKKKEKALLAENTSLSEKCDSYSSQQAKKDDRDNIGEVEGITDQSSPNSDVETGLFIGLPETRTRRISPS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04590 227 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Vivi7g04590 227 Coils Coil 92 119 - -
Vivi7g04590 227 CDD MADS_MEF2_like 7 77 IPR033896 GO:0000977|GO:0045944
Vivi7g04590 227 MobiDBLite consensus disorder prediction 174 227 - -
Vivi7g04590 227 MobiDBLite consensus disorder prediction 180 195 - -
Vivi7g04590 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 7 178 - -
Vivi7g04590 227 SUPERFAMILY SRF-like 7 89 IPR036879 GO:0003677|GO:0046983
Vivi7g04590 227 Gene3D - 19 98 IPR036879 GO:0003677|GO:0046983
Vivi7g04590 227 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Vivi7g04590 227 Coils Coil 126 175 - -
Vivi7g04590 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
Vivi7g04590 227 FunFam MADS-box transcription factor MADS-MC 17 89 - -
Vivi7g04590 227 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Vivi7g04590 227 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Vivi7g04590 227 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Vivi7g04590 227 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04590 227 ProSitePatterns MADS-box domain signature. 7 61 IPR002100 GO:0003677|GO:0046983
Vivi7g04590 227 Pfam K-box region 90 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04590 Vivi-Chr7 117272161 117278725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04590 5 163 MADS-box Gene Family AT2G45660 69.565 3.27e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi7g04590 K-box 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04590 - - vvo:131620066 290.812