Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04582 ATGGTGAGAGGAAAGACGCAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCATTTGAGTTATCAATTTTGTGTGATGCTGAAGTTGCTCTTGTTGTTTTCTCACCAAAAGGGAGACTTTATGAGTTTGCCAGTTCAAGAGGTAGTTTAGTACTGTTAATAACTGATCTATTACGTGTAATTTTTATTTTTGGAACACTATGCCTCTTAACTGTATTTCGAGCATTAAAGACACATTTTGAACGATACCGCAGTCATAGCAGGATTAATAATACTCCAACAACATCTGAATCAATTGAAAATACTCAGCATTTGATGGAAGAAGCAGAAAACATGATGAAAAAGATTGATCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTTTGGGGACTTGTTCAATTGAAGAACTGCAAAGGATAGAGCAACAGTTGGAGAAGAGTATAACCAAAATTCGAGCAAAAAAGACTCAGGTTTTCAGGGAACAAATTCAGCAGCTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGTCATGCTCTCTAAGAAGTATGGTAATTATTCATCAAAGTCAGCAAAAAACAATGAAAAAGAAAATATAGGTGAAGGTGAAGCTTATGCATATCAGAGTAGTCCAAGTTCAGATGTGGTGACTGAATCATGGTTGTCAAGATCTCGATCTAGATCTTAA 738 0.3577 MVRGKTQMKRIENATSRQVTFSKRRNGLMKKAFELSILCDAEVALVVFSPKGRLYEFASSRGSLVLLITDLLRVIFIFGTLCLLTVFRALKTHFERYRSHSRINNTPTTSESIENTQHLMEEAENMMKKIDLLETSKRKLLGEGLGTCSIEELQRIEQQLEKSITKIRAKKTQVFREQIQQLKEKEKALVAENVMLSKKYGNYSSKSAKNNEKENIGEGEAYAYQSSPSSDVVTESWLSRSRSRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04582 245 Coils Coil 150 173 - -
Vivi7g04582 245 Coils Coil 245 245 - -
Vivi7g04582 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04582 245 Coils Coil 113 143 - -
Vivi7g04582 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi7g04582 245 Gene3D - 13 70 IPR036879 GO:0003677|GO:0046983
Vivi7g04582 245 Pfam K-box region 114 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04582 245 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Vivi7g04582 245 Coils Coil 179 199 - -
Vivi7g04582 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi7g04582 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi7g04582 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi7g04582 245 MobiDBLite consensus disorder prediction 203 245 - -
Vivi7g04582 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 202 - -
Vivi7g04582 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi7g04582 245 ProSiteProfiles K-box domain profile. 116 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g04582 245 MobiDBLite consensus disorder prediction 222 245 - -
Vivi7g04582 245 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Vivi7g04582 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04582 Vivi-Chr7 117158854 117164134 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04582 1 187 MADS-box Gene Family AT2G45660 61.376 2.37e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi7g04582 K-box 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04582 - - vvo:131620066 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04582 7 117158854 117164134 Vivi7g04582 7 117158854 117164134 ECH