Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04560 ATGGATATGAAAGTGAAAAGGTTCAACAGAACTGATCGAGTCATTGGGACAACGTGCATCTATTGGCTCCAAGGAAGATGCAACAGAAACCCGTGTAGGTTTCTTCACAGTGAGACACCGTCTATTAGGGCTACTGCTTCTTATAGAGATGATACTGCATCGTACCATAACGCAAGGAAGCGTTGTAGTGTATCGCCTACGCCTGAATCTGCTAAGAGGGTCTCATGGAGAAAGACTGAAAATGACATGTCGGTTCCCAAACATACTACTAAGAAGGTCTTGAGTAGAAATTTGGAAGATGACAGAGAAAGGACACAAGTTCTTCCTCAGAAGCCTTCAACAAGCATCTGCAAATATTGGATGAATGACAACTGTGTTCATGGTGATAAGTGCCGGAATTTACACTCATGGTCTTATGGCGATGGGTTTTCCATATTAGCAAAGCTTCAAGGACACAAGAAGCTTGCCACCGGAATTGCACTTCCAAATGGATCAGACAAACTTTATTCTGGCAGCGCCGACGGGACACTTCGGTCATGGGACTGCCATACCGGTCAATGTGCCAATTTGATGAATCTTGGTGCCGAAGCTACCTCTTTGATTAATGAAGGCCCATGGATTTTTGTTGGTCTTCCTAACACTGTCAAGGCATGGAATATTCAGACTGCTTCGCAGTTTACTCTTGATGGACCTAAGGGACGAGTCCTTGCCATGACTGTTGGCAATGATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCGGAACCCAATTCTCCTTTTGAATTGGTTGCATCCCTATGCGGTCACACTAAATCTGTTGTTTGCCTGACTGTTGGGGCTCACAACAAGATGCTGTACTCAGGATCCAAGGATCAAAGCATTAAGGTTTGGGACCTAGACACATTTCAGTGTAAAATGACACTCAATGCACATGCAGATGAAGTCACATCCCTTCTTTGTTGGGACAATTTCTTGTTATCGGGTTCATCAGACCGCACTATCAAGGTCTGGTATAAAACCATGGAGGAAACTTTGGAAGTTGCATATTCACACGATGTAGAAAATGGTGTTGTTGCACTTTCTGGGATGACAGATCCAAAAGATAAGCCTATAGTGTTCTGCTCTACTAGAGACAATTCAGTTCGCCTCTATGAACTACCATCATTTGCCGAGAGGGGTAGATTGTTTGCTAAGCAAGAAGTTGGATTAATCGATGTAGCTCCTGGTGGACTCTTCTTCACCGGAGACAGAACTGGAATGCTGACTGTCTGGAAATGGTTAGAAGAGCCCAAGGCTGCAGCATCCTCTTGA 1332 0.4459 MDMKVKRFNRTDRVIGTTCIYWLQGRCNRNPCRFLHSETPSIRATASYRDDTASYHNARKRCSVSPTPESAKRVSWRKTENDMSVPKHTTKKVLSRNLEDDRERTQVLPQKPSTSICKYWMNDNCVHGDKCRNLHSWSYGDGFSILAKLQGHKKLATGIALPNGSDKLYSGSADGTLRSWDCHTGQCANLMNLGAEATSLINEGPWIFVGLPNTVKAWNIQTASQFTLDGPKGRVLAMTVGNDTLLAGAEDGVISAWRGSSEPNSPFELVASLCGHTKSVVCLTVGAHNKMLYSGSKDQSIKVWDLDTFQCKMTLNAHADEVTSLLCWDNFLLSGSSDRTIKVWYKTMEETLEVAYSHDVENGVVALSGMTDPKDKPIVFCSTRDNSVRLYELPSFAERGRLFAKQEVGLIDVAPGGLFFTGDRTGMLTVWKWLEEPKAAASS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04560 443 Pfam WD domain, G-beta repeat 268 305 IPR001680 GO:0005515
Vivi7g04560 443 Pfam WD domain, G-beta repeat 310 344 IPR001680 GO:0005515
Vivi7g04560 443 Pfam WD domain, G-beta repeat 146 181 IPR001680 GO:0005515
Vivi7g04560 443 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Vivi7g04560 443 PRINTS G protein beta WD-40 repeat signature 168 182 IPR020472 -
Vivi7g04560 443 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Vivi7g04560 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 149 181 - -
Vivi7g04560 443 SUPERFAMILY WD40 repeat-like 114 432 IPR036322 GO:0005515
Vivi7g04560 443 Gene3D - 136 227 IPR015943 GO:0005515
Vivi7g04560 443 Gene3D - 16 135 - -
Vivi7g04560 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 344 - -
Vivi7g04560 443 ProSitePatterns Trp-Asp (WD) repeats signature. 292 306 IPR019775 -
Vivi7g04560 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 344 IPR001680 GO:0005515
Vivi7g04560 443 ProSiteProfiles Zinc finger C3H1-type profile. 18 39 IPR000571 GO:0046872
Vivi7g04560 443 Gene3D - 228 442 IPR015943 GO:0005515
Vivi7g04560 443 ProSiteProfiles Zinc finger C3H1-type profile. 111 138 IPR000571 GO:0046872
Vivi7g04560 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 190 IPR001680 GO:0005515
Vivi7g04560 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 314 IPR001680 GO:0005515
Vivi7g04560 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 308 - -
Vivi7g04560 443 SMART WD40_4 395 432 IPR001680 GO:0005515
Vivi7g04560 443 SMART WD40_4 142 181 IPR001680 GO:0005515
Vivi7g04560 443 SMART WD40_4 308 345 IPR001680 GO:0005515
Vivi7g04560 443 SMART WD40_4 221 258 IPR001680 GO:0005515
Vivi7g04560 443 SMART WD40_4 266 305 IPR001680 GO:0005515
Vivi7g04560 443 PANTHER - 25 442 IPR044715 -
Vivi7g04560 443 SMART c3hfinal6 111 137 IPR000571 GO:0046872
Vivi7g04560 443 SMART c3hfinal6 13 38 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04560 Vivi-Chr7 116878746 116881458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04560 245 344 Miscellaneous Gene Families AT5G08390 29.412 7.07e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi7g04560 WD40 9.6e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04560 - - mtr:25500966 562.377