Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04555 ATGTTCAGTGCAGAAGAATCTAGCTTCGGTCGGCGTCAGTCGAAGATGATTACGGTTAACAAGGGTCTCGAGTCCCAATCATCCATCAATACAAAAGTACAGTCTCTCCAATATGCAAATGGCAAGATACAAGAATCTCCTGATGCAGATACCACATTACTCCCGAGAAAGAGAAGGCGTACCTGGACTGATGACTTACATAGGAAGTTCTTGGAAGCTGTTGAAACAGCAGGAATCAACGCTCGTCCGAAGGTGATATTTGAGCTTATGGATGTCGAAGGACTTACAAAAGAGAGCGTCGCAAACTATTTGCAGAAATATCGTCAATCTATGAAACTACGAGCTAGTGCAATGGCTCAGCATGTGAATGGATATGTGTCTCTGACTAAGAAACGAGGAAAAGGCCCTCTATTCTTTAAGAATCAAGATGCAACTAAGAATCCCTCTAATCTCAGTGATGGTATGCCTGTGCAAGCTTCTGATTCGTCTGCACTATATGCTTCCCTGGGAAGCTCAAATTATCAGGAGTCACCTTTCGAGCAAAGCCAAATGTACCCGCCATTGAAACAGCAACGTGTTGAAAAACAATTGGATTTTCGAACACTGCTGGCCTTTGACATGAACGATCAGTTTTACCCGGCACTTCCTATTGCTCTACTACCACCAGAAAAAGATAAAAAGATTGATGAAATTTTTTATTCAAAACAGATGTTTACTGATGAGGATTTGAATATGTGGTTGTCAACAATTCCAGACAATGTGGATGATGATGGTAATGATAATACTTTTGCTTGA 795 0.4126 MFSAEESSFGRRQSKMITVNKGLESQSSINTKVQSLQYANGKIQESPDADTTLLPRKRRRTWTDDLHRKFLEAVETAGINARPKVIFELMDVEGLTKESVANYLQKYRQSMKLRASAMAQHVNGYVSLTKKRGKGPLFFKNQDATKNPSNLSDGMPVQASDSSALYASLGSSNYQESPFEQSQMYPPLKQQRVEKQLDFRTLLAFDMNDQFYPALPIALLPPEKDKKIDEIFYSKQMFTDEDLNMWLSTIPDNVDDDGNDNTFA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04555 264 Gene3D - 57 112 - -
Vivi7g04555 264 Pfam Myb-like DNA-binding domain 59 108 IPR001005 -
Vivi7g04555 264 SUPERFAMILY Homeodomain-like 55 112 IPR009057 -
Vivi7g04555 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 112 IPR017930 -
Vivi7g04555 264 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 31 184 IPR044841 GO:0003700|GO:0006355
Vivi7g04555 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 109 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04555 Vivi-Chr7 116843897 116849812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04555 56 112 G2-like Transcription Factor Family AT5G05090 51.724 2.41e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi7g04555 Myb_DNA-binding 4.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04555 - K14491 vvo:131616681 526.939