Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04553 ATGAGTTCAGGTGCAAACTTGGTTAGTACAATTATTGGATTTGGCATGAGTGCAACATTCATTGTATTTGTTTGTACAAGAATAATCTGTGGAAGATTTAGAGACAGACATGTGGGTTCACGTACTATATTTCAGATTGAATCGAGGCCAGATATTGAACAGCCAGAAACGGATGGCAATGAACCTGAGCCTGCATTTGTTGCTGCAATTCCTACTTTGAATTTCAATCAAGAGGCTTTTAATACCATTCAATGTACACAGTGTGTGATATGTTTGGGAGAGTACAAAGAAAAAGAAGTGTTGCGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATGTCTGGCTAAGGAAACAATCAACTTGTCCTGTGTGTCGTTTGACATTGCATAATGTTTGTGAAGAAAAACATGCTTCAGAAGAGAATGAGAGAGAAGTTGAAGTTAGTGCAAGAGAATCAGAATCAGAGTTGTGA 486 0.3765 MSSGANLVSTIIGFGMSATFIVFVCTRIICGRFRDRHVGSRTIFQIESRPDIEQPETDGNEPEPAFVAAIPTLNFNQEAFNTIQCTQCVICLGEYKEKEVLRIIPYCGHTFHLSCIDVWLRKQSTCPVCRLTLHNVCEEKHASEENEREVEVSARESESEL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04553 161 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Vivi7g04553 161 PANTHER OS11G0150450 PROTEIN 1 152 - -
Vivi7g04553 161 SMART ring_2 88 129 IPR001841 -
Vivi7g04553 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 137 IPR013083 -
Vivi7g04553 161 Pfam Ring finger domain 87 130 IPR001841 -
Vivi7g04553 161 SUPERFAMILY RING/U-box 87 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04553 Vivi-Chr7 116825511 116826840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04553 77 133 C3H Transcription Factor Family AT4G10160 54.386 1.21e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04553 - - vvo:131618370 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04553 7 116825511 116826840 Vivi7g04553 7 116825511 116826840 ECH