Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04549 ATGAGTTTTGGGGGTTTTGTAGAGAACAATTCAGGGGGTGGTGGTGTGAGAAACATAGGAGGAGAAATTTCCTACAACAACGAAAGAATGCCATTTGGTTCTTTCTCACAACCTCGTCTTGTTACAACACCAACTTTGGCTAAATCCATGTTCAACTCTTCTGGATTGTCACTTGCACTTCAAACTAATATTGATGGACAAGAAGATGTGAATAGATCAATGCATGAGAATTTTGAGCAAAATGGTTTGAGAAGGAGTAGAGAAGAGGAACAAAGTAGATCTGGGAGTGATAACTTGGATGGTGTTTCTGGTGATGAACAAGATGCTGATGATAAACCTCCTAGGAAAAAGAGATATCACCGACACACTCCTCAACAGATTCAAGAGCTTGAAGCTTTGTTTAAGGAGTGTCCTCACCCAGATGAAAAGCAAAGATTGGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAATTGGAAAGGCATGAGAACTCATTGCTTAGGCAAGAGAATGATAAGCTAAGAGCTGAGAATATGTCTATAAGGGATGCAATGAGGAATCCTATATGTTCGAATTGTGGTGGTCCGGCTATAATCGGCGAGATTTCACTTGAGGAACAACATCTTCGAATCGAGAATGCAAGGTTGAAAGATGAGCTAGATAGAGTTTGTGCACTGGCTGGAAAGTTTTTAGGCCGTCCGATTTCTTCATTACCGAACTCAAGTTTGGAACTCGGTGTTGGAGGAAACAACAATGGTTTTAATGTGATGAACAATGTTTCTTCATCATTACCTGATTTTAGTGTAGGGATGAATAATAACTCTCTAGCCATTGTGTCTCCTTCAACTAGGCCAACAACTATGGTGGGTGGATTTGATAGATCGGTGGAAAGGTCTATGTTTCTTGAGCTTGCTTTAGCTGCTATGGATGAGTTGGTTAAGATGGCGCAAACTAGTGAGCCTCTTTGGATTAGGAGTCTTGAAGGGGGAAGGGAGATTTTGAACCATGATGAATATTCGAGGACATTCACTCCTTGCATTGGTTTAAGACCTAATGGTTTTGTCTCCGAGGCCTCTAGAGAGACTGGTATGGTCATAATCAATAGCTTGGCCCTTGTCGAGACTCTTATGGACTCGAATCGATGGATAGAGATGTTTCCATGTATCATTGCAAGAACCTCAACAACCGAAGTGATATCTAATGGAATAAACGGAACAAGAAATGGTGCACTTCAACTAATGCAAGCTGAACTTCACGTGCTATCACCATTAGTTCCAGTCCGCGAGGTAAACTTCCTTAGGTTTTGCAAGCAACACGCAGAAGGAGTTTGGGCTGTAGTCGACGTGTCTATCGACACCATTCAAGAAACTTCCGGCGCCACAACTTTCATGAACTGCAGGAAGCTTCCCTCTGGTTGTGTTGTTCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATATGAAGAAAACACAGTCCACCAGCTGTACAGACCATTGTTGAGTTCAGGTATGGGATTCGGTGCGGCACGCTGGGTCGCTACTCTACAACGTCAGTGCGAGTGTCTTGCTATATTAATGTCCTCCGCTGCACCTTCTCGAGACCACTCCGCAATAACAGCAGGAGGAAGGAGGAGCATGCTGAAACTCGCACAGCGAATGACGAACAACTTCTGCGCGGGGGTATGTGCATCCACGGTCCATAAGTGGAACAAGCTGAGTCCAGGAAACGTGGACGAAGATGTACGAGTCATGACAAGGAAGAGTGTCGACGATCCTGGTGAGCCACCAGGGATCGTGTTGAGCGCTGCCACGTCAGTGTGGCTACCAGTTTCGCCTCAAAGACTGTTCGATTTTCTACGCGACGAAAGGCTCCGTAGCGAATGGGATATACTATCCAACGGTGGTCCCATGCAAGAAATGGCTCATATTGCCAAAGGACAAGATCATGGTAACTGTGTTTCTCTTCTCCGTGCTAGTGCTATGAATTCGAACCAGAGTAGTATGCTGATATTACAGGAAACATGCATAGACGAAGCGGGGTCGCTTGTGGTCTACGCGCCGGTGGATATTCCGGCCATGCATGTTGTGATGAACGGTGGTGATTCAGCTTACGTGGCATTATTACCATCTGGTTTCGCTGTTGTACCCGATGGGCCTGGGTCTCGTGGGCCGGAGAATGGGTCTAGCGCGAATGGCGGTGAGGCGCGAGTTAGCGGGTCACTTTTAACAGTGGCGTTTCAGATCCTTGTGAATAGTCTTCCTACGGCAAAACTCACCGTGGAGTCAGTTGAAACAGTGAACAATCTCATTTCTTGCACCGTTCAGAAAATCAAAGCTGCACTTCACTGTGAAAGCTGA 2421 0.4519 MSFGGFVENNSGGGGVRNIGGEISYNNERMPFGSFSQPRLVTTPTLAKSMFNSSGLSLALQTNIDGQEDVNRSMHENFEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNGFNVMNNVSSSLPDFSVGMNNNSLAIVSPSTRPTTMVGGFDRSVERSMFLELALAAMDELVKMAQTSEPLWIRSLEGGREILNHDEYSRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSNRWIEMFPCIIARTSTTEVISNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIQETSGATTFMNCRKLPSGCVVQDMPNGYSKVTWVEHAEYEENTVHQLYRPLLSSGMGFGAARWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLSPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVVPDGPGSRGPENGSSANGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04549 806 SUPERFAMILY Bet v1-like 570 799 - -
Vivi7g04549 806 SMART START_1 318 542 IPR002913 GO:0008289
Vivi7g04549 806 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Vivi7g04549 806 MobiDBLite consensus disorder prediction 78 95 - -
Vivi7g04549 806 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Vivi7g04549 806 ProSiteProfiles START domain profile. 309 545 IPR002913 GO:0008289
Vivi7g04549 806 FunFam Homeobox-leucine zipper protein GLABRA 2 318 541 - -
Vivi7g04549 806 CDD homeodomain 115 173 IPR001356 GO:0003677
Vivi7g04549 806 Pfam Homeodomain 116 171 IPR001356 GO:0003677
Vivi7g04549 806 SUPERFAMILY Homeodomain-like 101 173 IPR009057 -
Vivi7g04549 806 Coils Coil 167 199 - -
Vivi7g04549 806 MobiDBLite consensus disorder prediction 78 123 - -
Vivi7g04549 806 SUPERFAMILY Bet v1-like 311 542 - -
Vivi7g04549 806 Gene3D - 102 189 - -
Vivi7g04549 806 CDD START_ArGLABRA2_like 313 541 - -
Vivi7g04549 806 Pfam START domain 318 542 IPR002913 GO:0008289
Vivi7g04549 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 803 IPR042160 -
Vivi7g04549 806 FunFam Homeobox-leucine zipper protein HDG1 103 189 - -
Vivi7g04549 806 SMART HOX_1 114 177 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04549 Vivi-Chr7 116457403 116462868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04549 1 806 Homeobox Transcription Factor Family AT3G61150 65.496 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi7g04549 START 3.4e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04549 K09338 - gmx:100811873 1354.73