Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04541 ATGAATATGATGCGTCGCCTCAAGAGCATTGCTTCTGGGAGGACTTCGATTTCTTCAGATCCTGGAGGGGATTCTAATTCGAAAAGAGCGAAGCTTGATCAAGAAACTGAGAAGGCGTTTTCAGGGAGGGGAACAAATACTTTAAGTAGAAGTGTTCGGGAGCAGCGGGTGGATGCTTCGAAAGAAGCTACCGTTGGGAGTTCTAATGTAGCTGCAGTAACTAAAACTGAGAAGTTAGGTTTTGATGAGCTTCCGAAAGAATTGCATGAGATGAAAATTAGAGACGAGAAAAGTACAAACAACAATGAGAAGATTTTTTGTATGCAGGAAATAGAAGCAACTACAGTGAGTGGCAATGGAACAGAAACAGGTCAAATTATTACGACTACTATCAGTGGTCGAGATGGACAACCAAAGCAGACAATCTCTTACATGGCCGAACGCGTGGTTGGGACCGGCTCTTTCGGCGTTGTTTTTCAGGCTAAGTGCCTTGAAACCGGTGGAGCGGTTGCCATAAAAAAAGTGTTGCAAGACAAGAGATATAAGAACAGGGAACTCCAAGTTATGCGGATGGTTGATCACCCTAATGTTGTTAAGTTGAAGCACTGTTTCTATTCAACAACCGAGAAAGATGAGCTATACCTTAACCTTGTTTTGGAGTATGTACCTGAAACTGTTTACAAAGTTTCAAAGAACTATAGCCGGTCGCACCAACATATGCCTATCATTTACGTGCAGCTGTATACATACCAGATTTTACGAGGATTAAATTATTTACATGAAGTGATTGGCGTTTGTCATCGAGACATCAAACCACAGAATCTATTGGTCAATCAACAGACACATCAGTTGAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATTTCGTACATATGCTCAAGATATTATAGAGCTCCCGAACTTATATTTGGAGCTACTGAATACACAACTGCTATTGATATGTGGTCTGCTGGTTGTGTTTTGGCTGAGCTCCTTCTAGGACAGGCATTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTGGTGGAGATCATTAAGGTCTTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTCCCGCAGATTAAAGCGCACCCGTGGCACAAGCTTTTTCACAAGAGAATGCCATCTGAAGCAGTGGATTTAGTGTCAAGGTTGCTTCAGTATTCTCCACATCTACGTTGCACCGCCTTGGCGGCATGTGCACACCCATTCTTCGATGATCTGCGAGACCCAAAAGCCAGCCTGCCAAATGGACAACCACTACCTCCTTTGTTCAACTTCACACCTCAAGAACTGGTAAATGTGCCCGACGATTTGCGTCAACGTCTCATTCCTGAGCATGCAAGGAGTTAA 1422 0.4332 MNMMRRLKSIASGRTSISSDPGGDSNSKRAKLDQETEKAFSGRGTNTLSRSVREQRVDASKEATVGSSNVAAVTKTEKLGFDELPKELHEMKIRDEKSTNNNEKIFCMQEIEATTVSGNGTETGQIITTTISGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGGAVAIKKVLQDKRYKNRELQVMRMVDHPNVVKLKHCFYSTTEKDELYLNLVLEYVPETVYKVSKNYSRSHQHMPIIYVQLYTYQILRGLNYLHEVIGVCHRDIKPQNLLVNQQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVLAELLLGQALFPGESGVDQLVEIIKVLGTPTREEIRCMNPNYNEFKFPQIKAHPWHKLFHKRMPSEAVDLVSRLLQYSPHLRCTALAACAHPFFDDLRDPKASLPNGQPLPPLFNFTPQELVNVPDDLRQRLIPEHARS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04541 473 SUPERFAMILY Protein kinase-like (PK-like) 143 455 IPR011009 -
Vivi7g04541 473 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g04541 473 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g04541 473 FunFam Glycogen synthase kinase-3 beta 128 223 - -
Vivi7g04541 473 ProSitePatterns Protein kinases ATP-binding region signature. 150 174 IPR017441 GO:0005524
Vivi7g04541 473 MobiDBLite consensus disorder prediction 9 25 - -
Vivi7g04541 473 MobiDBLite consensus disorder prediction 1 66 - -
Vivi7g04541 473 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g04541 473 CDD STKc_GSK3 139 431 IPR039192 -
Vivi7g04541 473 Gene3D Transferase(Phosphotransferase) domain 1 224 472 - -
Vivi7g04541 473 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 110 472 - -
Vivi7g04541 473 Gene3D Phosphorylase Kinase; domain 1 129 223 - -
Vivi7g04541 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vivi7g04541 473 FunFam Shaggy-related protein kinase kappa 224 472 - -
Vivi7g04541 473 MobiDBLite consensus disorder prediction 39 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04541 Vivi-Chr7 116202824 116207061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04541 150 438 Core Cell Cycle Gene Families AT1G76540 36.027 6.95e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vivi7g04541 Pkinase 2.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04541 K27414 - gmx:100811346 790.801