LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g04504	ATGGAGGAAGAGAATAAAGAAATTGAATCATTTAAGGATTTGGGCTTGAATGAGTCATTGGTGGAAGCTTGTGAAAAGCTGGGTTGGAAGAATCCGCTTAAGATTCAAATAGAAGCAATTCCTCAAGCTCTACAAGGGAAAGATGTGATTGGAATTTCCCAAACGGGTTCTGGTAAAACTGGAGCTTTTGTTCTTCCTATATTACATGCACTCTTAGAATCACCATATTCTCTCCGGAACAATTTCTTTGCTTGTGTAATGTCTCCCACAAGGGAGCTTGCTTTTCAAATTGCTGAACAATTTCAAGCTCTAGGTTCTGAAGTAGGTGTCAAGTGTGCTGTGCTTGTTGGACAGATTGACATGGTAAGACAGGCCATCGAGATTGCAAAGCGACCTCATATTATTGTCGGGACACCTGGACGAGTCTTGGATCACCTAAAAAACACCAAAGGATTTTCTCTTGATAAACTGAAATACTTGGTCTTAGATGAGGCAGACAGACTGTTGGATGAGGACTTTGAGAAAACGCTTACTGAATTCTTAGAATTTATTCCTCGTGAGCGGAGAACATTTCTTTTTTCAGCCACGATGACAAAGAAGGTCCAGAAGCTCCAAAAGGCTTGCTTAAGGAAGCCTGTGAAGATTGAAGTATCATCCAAATATTCTACTGTGGACACACTGAAGCAGCAGTATCTCCTTGTGCCGGCAAAACATAAGGATTGCTACCTTGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTATTCGCCGAGAAATGTGAGACAACATGGCTTCTGGCTTTGATTCTTAAAAATCTTGGTTTGAAAGCAATCTCAATTAACGGTCATGTGAGTCAGCCGAAGAGACTTGAAGCCTTGGAGAAATTCAAGTCTAGGGAGTGCAATATTCTCGTTTGTTCTGACGTAGCCAGTAGGGGACTTGATATTCCAGCGGTAGATATGGTGATTAACTATAGTATTCCCAAAAGCAAAGTTTATGTACATCGTGTGGGAAGAACCGCTCGTGCAGGGCGGTCTGGATTTGCCATTTCCCTTGTGAACCAATACGAAGTGGCATCGTACATGAAGATAGAGAAGTTTATAGGCAAGAAGCTACCAGAGTATCCTGCAGAGGAAGCGGAAGTTTTGTTTTTGAAAGAGCGCGTTAGTGAGGCCAAAAGATCAGCAGACAAGGAAATGAAGGAATCCAGCGAGAAGAAGAAACGGAGGAGTGAAGGAGATTTTAGTGAAGAGGATGAGGACGACTTTGACAAATACTTGGGTGTCAAAAATAAAAATTCTTTCAAGAAGTTGAGAAGATGA	1329	0.4161	MEEENKEIESFKDLGLNESLVEACEKLGWKNPLKIQIEAIPQALQGKDVIGISQTGSGKTGAFVLPILHALLESPYSLRNNFFACVMSPTRELAFQIAEQFQALGSEVGVKCAVLVGQIDMVRQAIEIAKRPHIIVGTPGRVLDHLKNTKGFSLDKLKYLVLDEADRLLDEDFEKTLTEFLEFIPRERRTFLFSATMTKKVQKLQKACLRKPVKIEVSSKYSTVDTLKQQYLLVPAKHKDCYLVYILTEMAGSTSMVFAEKCETTWLLALILKNLGLKAISINGHVSQPKRLEALEKFKSRECNILVCSDVASRGLDIPAVDMVINYSIPKSKVYVHRVGRTARAGRSGFAISLVNQYEVASYMKIEKFIGKKLPEYPAEEAEVLFLKERVSEAKRSADKEMKESSEKKKRRSEGDFSEEDEDDFDKYLGVKNKNSFKKLRR	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g04504	442	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	161	169	IPR000629	-
	Vivi7g04504	442	MobiDBLite	consensus disorder prediction	394	417	-	-
	Vivi7g04504	442	Gene3D	-	1	219	IPR027417	-
	Vivi7g04504	442	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	242	385	IPR001650	-
	Vivi7g04504	442	SMART	ultradead3	28	230	IPR014001	-
	Vivi7g04504	442	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	4	412	-	-
	Vivi7g04504	442	MobiDBLite	consensus disorder prediction	394	422	-	-
	Vivi7g04504	442	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	40	215	IPR014001	-
	Vivi7g04504	442	Pfam	DEAD/DEAH box helicase	34	204	IPR011545	GO:0003676\|GO:0005524
	Vivi7g04504	442	CDD	SF2_C_DEAD	227	355	-	-
	Vivi7g04504	442	SMART	helicmild6	266	346	IPR001650	-
	Vivi7g04504	442	Pfam	Helicase conserved C-terminal domain	242	346	IPR001650	-
	Vivi7g04504	442	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	9	37	IPR014014	GO:0003724
	Vivi7g04504	442	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	6	217	IPR027417	-
	Vivi7g04504	442	CDD	DEADc_DDX47	10	216	IPR044765	GO:0005524
	Vivi7g04504	442	Gene3D	-	221	393	IPR027417	-
	Vivi7g04504	442	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	154	359	IPR027417	-
	Vivi7g04504	442	Coils	Coil	388	408	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g04504	Vivi-Chr7	115603224	115608360	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g04504	8	385	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.158	1.01e-55	188

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g04504	K14777		-	gmx:100775796	643.269