Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04473 ATGGTTTATCCAAAGGAACCGGCGAAGATAAGGTGGGGAGAATTGGAAGAAGATGTCGGGGAGGATCTCGATTTCCTGCTACCACCATGCCAGGTGATAGGACCTGACGAAAATGGAATCAAGAGAGCTATTGAGTACGAATTCGACGAGGATGGTAACATGGTTAAAATTACAACAATCACCCGCACGCGCAAACTCGCCAACATGCGTATAAGTAAGCGCGCCATAGAGCGACGTAACTTGCCTAAATTTGGCGACGCGGTTCATGAAGATAGCAGTAGTCACCTTACTATGGTTTCTACTGAAGAAATACTTCTCGAACGCCCTAAGCCTATTGGTATATCTCTAACAGCGGATGCATCCGGTTCAACCAATGGTGTATATGTACCTCGCTGCATGAGAGGTAGTGCAACTGCAGACAGGATTGTAGAGTCAGGTATGAGGCGGAGGAACGATGAGAATTCTGTGCGAGTAAACAATCTCTCCGAGGACACGAGGGAGCCGGATTTGTATGAGTTATTTCGACCTTTTGGTTGTGTGAGGAGGGTTTATGTTGCTATTGATCAAAAGAGTGGCACGAGTAGGGGGTTTGGGTTTGTTAACTTTGTGAGCAGGGAAGATGCTGGGAGAGCTATTAACAAACTCAATGGATATGGCTATGATAATCTCATCCTGAGGGTTGAATGGGCCACCCCAAGAACAACATAA 708 0.4633 MVYPKEPAKIRWGELEEDVGEDLDFLLPPCQVIGPDENGIKRAIEYEFDEDGNMVKITTITRTRKLANMRISKRAIERRNLPKFGDAVHEDSSSHLTMVSTEEILLERPKPIGISLTADASGSTNGVYVPRCMRGSATADRIVESGMRRRNDENSVRVNNLSEDTREPDLYELFRPFGCVRRVYVAIDQKSGTSRGFGFVNFVSREDAGRAINKLNGYGYDNLILRVEWATPRTT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04473 235 Gene3D - 129 235 IPR012677 -
Vivi7g04473 235 SMART rrm1_1 155 228 IPR000504 GO:0003723
Vivi7g04473 235 Pfam Eukaryotic translation initiation factor 3 subunit G 32 109 IPR024675 -
Vivi7g04473 235 SUPERFAMILY RNA-binding domain, RBD 152 233 IPR035979 GO:0003676
Vivi7g04473 235 FunFam Eukaryotic translation initiation factor 3 subunit G 116 235 - -
Vivi7g04473 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 124 231 - -
Vivi7g04473 235 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 234 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vivi7g04473 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 222 IPR000504 GO:0003723
Vivi7g04473 235 CDD RRM_eIF3G_like 155 230 IPR034240 -
Vivi7g04473 235 PIRSF Transl_init_eIF-3_RNA-bind 113 235 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vivi7g04473 235 PIRSF Transl_init_eIF-3_RNA-bind 1 115 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vivi7g04473 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04473 Vivi-Chr7 115273852 115275644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04473 5 234 Eukaryotic Initiation Factors Gene Family AT5G06000 49.296 2.21e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04473 K03248 - gmx:100818725 319.316