Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04471 ATGCCTAATTCTGAAGCAGTGCTGCTGCAGCAGCTATTCAATTATGCAAATCAGACTTCAAAATCAATGAACTATGGTGTTACCGACGATACATTAGGGTATCTCAATGCAGTAAAAGTTGCATTTCAAAACAACATGGAAAAATATGATCAATTTTTACAAGTCCTGAGAGATTTCATTGCTAACAGAATTTATATAAGTGATGTCAAAGCAAAATTCAAGACCTTGTTTCAAGGACATAGATATTTAATTTTTAAATTCAACTCTTTCGTGCCGATGAACCATCGAATCGCACTATTTTCACCGGAGGATACATTAGGTTTTGTCCGGGCAGTGTTCCAAGGGACTCAATATAAGGGAGAAAGTAAACTTAATGAATTTTTAAAAGTTTTGAAGGATTACAAGGATCAAACTATTGATATAAGTTCTTTCACTTCAAGAGTAAAGGTGGTTCTCAAAACTCATCCCGATTTAATTTTGGAATTCAACTCTATCATGCCGAAAGAACATCAAATCACACTTTCATCCGAGGAAGAATCTTTTCTCCGGGCACTAAAACTTATGCTTCAATATAAGAGAGAAAGTAATTTTCAGTATTATGGAAAAGTTTTGGAGAATTTCAAGGGTCTAACTATTGATATAAGTTGTCTCACTGCAAGATTGGAGGTGCTTATCAAAAATCATCCCGAATTAATTTTAGAATTCAAAATCTTCATGCCATCCGGGAAAAAATTAAAAGATGATGGTCATCTTGGTCATTTTCTTCCTTGGGATGTGCTTGATATCATTTGCAAAAAACTAGATTTTGATGACCTCTTTTCGTTTTCTGGTGTTTGCAAGAGTTGGAGGACTTTTCATAAATCAAATTTCTTGTCATCCCAAGAACCGTTGCTTGTTCATATTACTGGTAATTGTACTCACTCATATTCCTTTATTAGCACACCCAATCAAAAAGTTTATGATTTGACGATGATGAGTAGCTTCCAGCCCCCTGACTGTGTCTATGTTAGAGTTTCCAGCGGATATTTCATCTTGGCCCATAAAAATAATTCATTTCTGCTATTAAATCAATTTACACTAGAAAAAAGGGTAATCAATGCCAACTTTACAGTTGAATCTCAGTTTTCTGATCGGTACGAAGCCTTGCTTGCTTTTGAGAAATGTTCTGAGGAATATGTCTTGGTTGTTTTATGCAAAGATTCTAGCCATTTGTATGTCTATCAATCTCGATACCATGGTTGGTTTACTTATTCAACATTAAAACCTAAGGAATTGGTAGTCGACTTTGTGGTTTTGAATAATATAATATATGTCGTCACTGACAAAGCCAACATAGGGGTACTAAACTTGAATTCCAAAAATATTCAATTTCTAAACCTCAAGAATACTCCCTCAAAAATTCCCTCCAAACTTCCCTCAGATTCCTTTAAATTGGTTAATTGTGATGAGCAACTTTTTGTGTTTCATTCAATATCCATCAATTATAAGAGGGAAGTTTACAAGATAGACTTGTCAACTATGAATTATGTTAAGATGAAAACTTTGGGTGACATTGCATTATTTTATGTTTCTGGGAGAAACTGTCGGGCATTGAGCAACCCGAAGAGATTTGGGTACGAGAGCAACCATGTGTATGAAGTTAGTAGTCTATCTCAATGTACTAAGTATGATTGGAATGCTGGTCGTCCATCAAAAATATGGAGTGCTGGTTGTACATCAAAAATATACCCATATCTTCGTTCTCTTAAAGACTTCAATCTCTTTGATTGGTGTTTTAGACATGTAAAATACGAAGTAGATTATTCTTTAGTTGAATAA 1818 0.3449 MPNSEAVLLQQLFNYANQTSKSMNYGVTDDTLGYLNAVKVAFQNNMEKYDQFLQVLRDFIANRIYISDVKAKFKTLFQGHRYLIFKFNSFVPMNHRIALFSPEDTLGFVRAVFQGTQYKGESKLNEFLKVLKDYKDQTIDISSFTSRVKVVLKTHPDLILEFNSIMPKEHQITLSSEEESFLRALKLMLQYKRESNFQYYGKVLENFKGLTIDISCLTARLEVLIKNHPELILEFKIFMPSGKKLKDDGHLGHFLPWDVLDIICKKLDFDDLFSFSGVCKSWRTFHKSNFLSSQEPLLVHITGNCTHSYSFISTPNQKVYDLTMMSSFQPPDCVYVRVSSGYFILAHKNNSFLLLNQFTLEKRVINANFTVESQFSDRYEALLAFEKCSEEYVLVVLCKDSSHLYVYQSRYHGWFTYSTLKPKELVVDFVVLNNIIYVVTDKANIGVLNLNSKNIQFLNLKNTPSKIPSKLPSDSFKLVNCDEQLFVFHSISINYKREVYKIDLSTMNYVKMKTLGDIALFYVSGRNCRALSNPKRFGYESNHVYEVSSLSQCTKYDWNAGRPSKIWSAGCTSKIYPYLRSLKDFNLFDWCFRHVKYEVDYSLVE 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04471 605 SUPERFAMILY F-box domain 254 292 IPR036047 GO:0005515
Vivi7g04471 605 FunFam Paired amphipathic helix protein Sin3 30 92 - -
Vivi7g04471 605 CDD F-box_SF 255 283 - -
Vivi7g04471 605 SUPERFAMILY PAH2 domain 28 92 IPR036600 GO:0006355
Vivi7g04471 605 Gene3D Paired amphipathic helix 30 92 IPR036600 GO:0006355
Vivi7g04471 605 Gene3D Paired amphipathic helix 104 167 IPR036600 GO:0006355
Vivi7g04471 605 ProSiteProfiles PAH domain profile. 23 94 IPR003822 GO:0006355
Vivi7g04471 605 SUPERFAMILY PAH2 domain 176 241 IPR036600 GO:0006355
Vivi7g04471 605 Pfam F-box domain 255 284 IPR001810 GO:0005515
Vivi7g04471 605 Pfam Paired amphipathic helix repeat 125 163 IPR003822 GO:0006355
Vivi7g04471 605 Pfam Paired amphipathic helix repeat 47 90 IPR003822 GO:0006355
Vivi7g04471 605 Gene3D - 254 291 - -
Vivi7g04471 605 SMART fbox_2 255 295 IPR001810 GO:0005515
Vivi7g04471 605 SUPERFAMILY PAH2 domain 104 169 IPR036600 GO:0006355
Vivi7g04471 605 ProSiteProfiles PAH domain profile. 170 242 IPR003822 GO:0006355
Vivi7g04471 605 PANTHER SIN3B-RELATED 121 310 IPR039774 GO:0003714
Vivi7g04471 605 ProSiteProfiles PAH domain profile. 96 169 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04471 Vivi-Chr7 115187330 115190718 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04471 104 179 WRKY Transcription Factor Family AT4G12020 38.158 2.47e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi7g04471 PAH 2.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04471 - - vvo:131635782 1161.36