Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04470 ATGCTGAATCATTTATATTTTTCTATTTTTTGTTTTGAATTCAATTTGAATAGAATTATTTTCTTAATGATGAAGAACTATGGTGTTACCGACGATACATTAGGGTATCTCAATGCAGTAAAAGTTGCATTTCAAAACAACATGGAAAAATATGATCAATTTTTACAAGTCCTGAGAGATTTCATTGCTAACAGAATTTATATAAGTGATGTCAAAGCAAAATTCAAGACCTTGTTTCAAGGACATAGATATTTAATTTTTAAATTCAACTCTTTCGTGCCGATGAACCATCGAATCGCACTATTTTCACCGGAGGATACATTAGGTTTTGTCCGGGCAGTGTTCCAAGGGACTCAATATAAGGGAGAAAGTAAACTTAATGAATTTTTAAAAGTTTTGAAGGATTACAAGGATCAAACTATTGATATAAGTTCTTTCACTTCAAGAGTAAAGGTGGTTCTCAAAACTCATCCCGATTTAATTTTGGAATTCAACTCTATCATGCCGAAAGAACATCAAATCACACTTTCATCCGAGGAAGAATCTTTTCTCCGGGCACTAAAACTTATGCTTCAATATAAGAGAGAAAGTAATTTTCAGTATTATGGAAAAGTTTTGGAGAATTTCAAGGGTCTAACTATTGATATAAGTTGTCTCACTGCAAGATTGGAGGTGCTTATCAAAAATCATCCCGAATTAATTTTAGAATTCAAAATCTTCATGCCATCCGGGAAAAAATTAAAAGATGATGGTCATCTTGGTCATTTTCTTCCTTGGGATGTGCTTGATATCATTTGCAAAAAACTAGATTTTGATGACCTCTTTTCGTTTTCTGGTGTTTGCAAGAGTTGGAGGACTTTTCATAAATCAAATTTCTTGTCATCCCAAGAACCGTTGCTTGTTCATATTACTGGTAATTGTACTCACTCATATTCCTTTATTAGCACACCCAATCAAAAAGTTTATGATTTGACGATGATGAGTAGCTTCCAGCCCCCTGACTGTGTCTATGTTAGAGTTTCCAGCGGATATTTCATCTTGGCCCATAAAAATAATTCATTTCTGCTATTAAATCAATTTACACTAGAAAAAAGGGTAATCAATGCCAACTTTACAGTTGAATCTCAGTTTTCTGATCGGTACGAAGCCTTGCTTGCTTTTGAGAAATGTTCTGAGGAATATGTCTTGGTTGTTTTATGCAAAGATTCTAGCCATTTGTATGTCTATCAATCTCGATACCATGGTTGGTTTACTTATTCAACATTAAAACCTAAGGAATTGGTAGTCGACTTTGTGGTTTTGAATAATATAATATATGTCGTCACTGACAAAGCCAACATAGGGGTACTAAACTTGAATTCCAAAAATATTCAATTTCTAAACCTCAAGAATACTCCCTCAAAAATTCCCTCCAAACTTCCCTCAGATTCCTTTAAATTGGTTAATTGTGATGAGCAACTTTTTGTGTTTCATTCAATATCCATCAATTATAAGAGGGAAGTTTACAAGATAGACTTGTCAACTATGAATTATGTTAAGATGAAAACTTTGGGTGACATTGCATTATTTTATGTTTCTGGGAGAAACTGTCGGGCATTGAGCAACCCGAAGAGATTTGGGTACGAGAGCAACCATGTGTATGAAGTTAGTAGTCTATCTCAATGTACTAAGTATGATTGGAATGCTGGTCGTCCATCAAAAATATGGAGTGCTGGTTGTACATCAAAAATATACCCATATCTTCGTTCTCTTAAAGACTTCAATCTCTTTGATTGGTGTTTTAGACATGTAAAATACGAAGTAGATTATTCTTTAGTTGAATAA 1824 0.3366 MLNHLYFSIFCFEFNLNRIIFLMMKNYGVTDDTLGYLNAVKVAFQNNMEKYDQFLQVLRDFIANRIYISDVKAKFKTLFQGHRYLIFKFNSFVPMNHRIALFSPEDTLGFVRAVFQGTQYKGESKLNEFLKVLKDYKDQTIDISSFTSRVKVVLKTHPDLILEFNSIMPKEHQITLSSEEESFLRALKLMLQYKRESNFQYYGKVLENFKGLTIDISCLTARLEVLIKNHPELILEFKIFMPSGKKLKDDGHLGHFLPWDVLDIICKKLDFDDLFSFSGVCKSWRTFHKSNFLSSQEPLLVHITGNCTHSYSFISTPNQKVYDLTMMSSFQPPDCVYVRVSSGYFILAHKNNSFLLLNQFTLEKRVINANFTVESQFSDRYEALLAFEKCSEEYVLVVLCKDSSHLYVYQSRYHGWFTYSTLKPKELVVDFVVLNNIIYVVTDKANIGVLNLNSKNIQFLNLKNTPSKIPSKLPSDSFKLVNCDEQLFVFHSISINYKREVYKIDLSTMNYVKMKTLGDIALFYVSGRNCRALSNPKRFGYESNHVYEVSSLSQCTKYDWNAGRPSKIWSAGCTSKIYPYLRSLKDFNLFDWCFRHVKYEVDYSLVE 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04470 607 ProSiteProfiles PAH domain profile. 25 96 IPR003822 GO:0006355
Vivi7g04470 607 Gene3D - 256 293 - -
Vivi7g04470 607 ProSiteProfiles PAH domain profile. 172 244 IPR003822 GO:0006355
Vivi7g04470 607 SUPERFAMILY F-box domain 256 294 IPR036047 GO:0005515
Vivi7g04470 607 Pfam Paired amphipathic helix repeat 49 92 IPR003822 GO:0006355
Vivi7g04470 607 Pfam Paired amphipathic helix repeat 127 165 IPR003822 GO:0006355
Vivi7g04470 607 SUPERFAMILY PAH2 domain 31 96 IPR036600 GO:0006355
Vivi7g04470 607 ProSiteProfiles PAH domain profile. 98 171 IPR003822 GO:0006355
Vivi7g04470 607 PANTHER SIN3B-RELATED 30 101 IPR039774 GO:0003714
Vivi7g04470 607 SUPERFAMILY PAH2 domain 178 243 IPR036600 GO:0006355
Vivi7g04470 607 SMART fbox_2 257 297 IPR001810 GO:0005515
Vivi7g04470 607 Pfam F-box domain 257 286 IPR001810 GO:0005515
Vivi7g04470 607 SUPERFAMILY PAH2 domain 106 171 IPR036600 GO:0006355
Vivi7g04470 607 CDD F-box_SF 257 285 - -
Vivi7g04470 607 FunFam Paired amphipathic helix protein Sin3 32 94 - -
Vivi7g04470 607 Gene3D Paired amphipathic helix 106 169 IPR036600 GO:0006355
Vivi7g04470 607 Gene3D Paired amphipathic helix 32 94 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04470 Vivi-Chr7 115187326 115190578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04470 106 181 WRKY Transcription Factor Family AT4G12020 38.158 3.12e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi7g04470 PAH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04470 - - vvo:131635782 1212.98