Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04469 ATGTCTTTCACTGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTTTATGTTGTTGATTTGTTAACTCTTGAAAATATTCCTTACCATAAAAACTGCTTCAAATGTAGTCATTGCAAAGGTTGTCTCACGATGAGTACATACTCTTCCATGGATGGAATTCTCTATTGCAAGACACATTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAATTTCGCAAAGTCTTCTGACAAACCAAATGAGCTGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGTGGAACCCTGGACAAATGCGCGACTTGCTCTAAAACCGTCTATCCGCTGGAAAAGGTGACACTGGAAGGTGAATGCTACCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGTCCTTTGACACATTCAAACTATGCTGCACTTGATGGTGTCCTCTACTGCAGGGTCCATTTTGCGCAACTTTTCATGGAGAAAGGTAACTATAGCCATGTACTCAAATCTGCACACAAGAGGAATGGTTCTTCTGAGCCAATTGAAGTTGTTGAAGAGCCCTCACAATCAGCAGCAGAAGAACCTCAAGACCCACCAGAAGAAACCTCTTGA 618 0.4175 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKNCFKCSHCKGCLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKPNELNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTLEGECYHKNCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSEPIEVVEEPSQSAAEEPQDPPEETS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04469 205 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Vivi7g04469 205 Pfam LIM domain 104 159 IPR001781 -
Vivi7g04469 205 Pfam LIM domain 10 65 IPR001781 -
Vivi7g04469 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Vivi7g04469 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vivi7g04469 205 FunFam LIM domain and actin-binding 1 4 74 - -
Vivi7g04469 205 Gene3D Cysteine Rich Protein 5 72 - -
Vivi7g04469 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vivi7g04469 205 PANTHER OS06G0237300 PROTEIN 6 82 - -
Vivi7g04469 205 Gene3D Cysteine Rich Protein 100 168 - -
Vivi7g04469 205 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vivi7g04469 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Vivi7g04469 205 SMART lim_4 103 155 IPR001781 -
Vivi7g04469 205 SMART lim_4 9 61 IPR001781 -
Vivi7g04469 205 MobiDBLite consensus disorder prediction 173 205 - -
Vivi7g04469 205 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vivi7g04469 205 FunFam LIM domain and actin-binding 1 98 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04469 Vivi-Chr7 115166620 115168325 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vivi7g04469 LIM 2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04469 - K09377 gmx:100800234 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04469 7 115166620 115168325 Vivi7g04469 7 115166620 115168325 ECH
Vivi7g04469 7 115166620 115168325 Vivi7g04469 7 115166620 115168325 PCT