Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04451 ATGAACAACAACAATAGGGCGAGATATCCACCTCCTGGGATCGGTCCGGGTCGCGGAGGAGCGAATCCTAACGTGAATCTGAACCAGAACCCGAACCAGAATCCCAACCTGAACAATCAGTTTCAGCAGAGACCACCTTACCACCACCATAACCAACCGCAACAGCACCAGCCACACCATCAGCAGCAACAGCACCAGCAGCAGCAGTACTATGCGCAGAGACAAATGGTGCAGCAGCAACATCATCAGCAGCAAAATCAGCAGCAGCAGCAACAACAGTGGCTGAGAAGGGCGCAGTTGGGTGGTTCGGAATCCAACGCTGCTGACGAGGTTGAGAAGACCGTGCAGTCTGAAGCCATTGACTCAAGTTCTCAAGACTGGAAGGCCGGACTTAAGATTCCACCAGCTGATACACGCTATAGGACAGAGGATGTTACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACCGGAAGTGACATTCTTGCCAGGGCCAAAAATGGAACTGGCAAAACAGCTGCGTTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCTTGGTCCCGACACGTGAGTTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATCCAAGTTATGGTTACAACAGGAGGTACCAGTCTAAAAGATGACATAATGCGCTTATATCAACCAGTTCACCTGCTTGTCGGTACCCCAGGAAGGATATTGGATCTTACGAAAAAGGGTGTTTGCGTTCTTAAGCATTGCTCAATGCTGGTAATGGATGAGGCTGACAAGCTTCTCTCCCCAGAGTTCCAGCCTTCGATTCAGCAGCTGATTCATTTTCTTCCAACAAACCGTCAAATCCTGATGTTTTCAGCAACATATCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTAACAAACCATATGTCATTAACCTTATGGATGAGCTTACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTCTTTTCTAAGCTACAAATAAACCAATCAATTATCTTCTGCAACTCAGTGAACCGGGTTGAACTCCTTGCCAAGAAAATCACTGAACTGGGGTATTCATGTTTCTATATTCATGCAAAGATGCTGCAAGACCATCGTAATAGAGTATTTCATGATTTCCGTAATGGTGCATGCCGGAATCTTGTCTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTTGATTTTCCCAAGAACTCGGAGACTTATTTGCACAGGGTTGGTCGTTCAGGGAGATTTGGTCACCTTGGTTTAGCGGTGAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGCCGGTGA 1578 0.4354 MNNNNRARYPPPGIGPGRGGANPNVNLNQNPNQNPNLNNQFQQRPPYHHHNQPQQHQPHHQQQQHQQQQYYAQRQMVQQQHHQQQNQQQQQQQWLRRAQLGGSESNAADEVEKTVQSEAIDSSSQDWKAGLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKHCSMLVMDEADKLLSPEFQPSIQQLIHFLPTNRQILMFSATYPVTVKDFKDRFLNKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04451 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 505 IPR027417 -
Vivi7g04451 525 FunFam ATP-dependent RNA helicase DDX6 132 355 - -
Vivi7g04451 525 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Vivi7g04451 525 CDD SF2_C_DEAD 363 492 - -
Vivi7g04451 525 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 298 306 IPR000629 -
Vivi7g04451 525 Gene3D - 136 356 IPR027417 -
Vivi7g04451 525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 352 IPR014001 -
Vivi7g04451 525 Pfam Helicase conserved C-terminal domain 377 483 IPR001650 -
Vivi7g04451 525 MobiDBLite consensus disorder prediction 22 100 - -
Vivi7g04451 525 MobiDBLite consensus disorder prediction 109 124 - -
Vivi7g04451 525 Gene3D - 357 524 IPR027417 -
Vivi7g04451 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 69 524 - -
Vivi7g04451 525 SMART ultradead3 170 366 IPR014001 -
Vivi7g04451 525 SMART helicmild6 402 483 IPR001650 -
Vivi7g04451 525 FunFam ATP-dependent RNA helicase DDX6 356 525 - -
Vivi7g04451 525 MobiDBLite consensus disorder prediction 1 131 - -
Vivi7g04451 525 Pfam DEAD/DEAH box helicase 176 340 IPR011545 GO:0003676|GO:0005524
Vivi7g04451 525 CDD DEADc_DDX6 153 353 - -
Vivi7g04451 525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 522 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04451 Vivi-Chr7 114827814 114837339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04451 151 518 Eukaryotic Initiation Factors Gene Family AT3G19760 38.649 8.88e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04451 K12614 - fve:101307921 835.099