Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04445 ATGGATCGAGGCGACCAAATGGCGGCATTATCGGGTTCTGCGTCGTACTATATGCCGAGAGGAATACCTGGTTCTGGAAACCAGCACGAGTTGCTTAGTTCGGCCGGTATTCGTCAACTATCGAATGCCAACAATTCACCGTTTCAATCAAGTATTGGTGGTGGCGGTGGTGGTGGAGGTACTATTGGATCTACAATGCCGATGGATTCTTCTGGAATTTCATCCCAAAGTATCAATGTAGGCGGTCCTTCCGGGGGAGCAGCTTCAACTGGTGAGCCTGGCAAAAGGAAGCGGGGTAGACCGAGAAAATACGGGGCTGATGGAAGTGTTTCGTTGGCATTGACTCCAACAACACCAGCAAGTCAGCCTGGATCTGGATCTGGATCGCAAGGTCAGAAACGCGGTCGAGGCCGCCCGCCAGGGTCAGGAAAGAAACAACAGCTGGCTTCTGTTGGAGGTTTGATCTCTAGTTCAGCTGGGAACGGATTCGCGCCTCATGTCATCAACATTGCGATCGGAGAAGACATCGCAACGAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAGCAATATTTGTTATGTCTGCCAACGGTGCTGTCTCTACCGTGACGCTTTGCCAGCCTTCGACATCTGGGGGATCCGTCACATATGAGGGGCGTTTTGAGATACTAAGCCTGACAGGCTCTTACTTGGTTGCTGATAACAACGGCTTGCGAAATCGAACTGGTTCATTAAGTGTTACTCTTGCAAGTCCTGACGGTCGTGTCATTGGTGGAGGCGTCGGTGGTCTTCTCATCGCCGCAAGTCCAGTTCAGGTGATAGTCGGAAGCTTTATGTGGGGCGGACAAAAGCCAAAGAACAAGAAGAACGAAGATTCGGAAAATCAAGAAGTTGGCATCGAGCAAGACCATCATCACCATCACGGAGTTCATAATCCGGTTGCAGTGAACAGCATTTCACCAAACCAGAACCTGACTCCGAGTTCTCTGAATTCTTGGCCTGCATCGCGTCCATTGGATATGCGTAACTCCCATATGGACATTGATTTGATGCGCGGGTGA 1062 0.5038 MDRGDQMAALSGSASYYMPRGIPGSGNQHELLSSAGIRQLSNANNSPFQSSIGGGGGGGGTIGSTMPMDSSGISSQSINVGGPSGGAASTGEPGKRKRGRPRKYGADGSVSLALTPTTPASQPGSGSGSQGQKRGRGRPPGSGKKQQLASVGGLISSSAGNGFAPHVINIAIGEDIATKILAFSQQGPRAIFVMSANGAVSTVTLCQPSTSGGSVTYEGRFEILSLTGSYLVADNNGLRNRTGSLSVTLASPDGRVIGGGVGGLLIAASPVQVIVGSFMWGGQKPKNKKNEDSENQEVGIEQDHHHHHGVHNPVAVNSISPNQNLTPSSLNSWPASRPLDMRNSHMDIDLMRG 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04445 353 ProSiteProfiles PPC domain profile profile. 160 301 IPR005175 -
Vivi7g04445 353 MobiDBLite consensus disorder prediction 27 52 - -
Vivi7g04445 353 CDD DUF296 165 278 IPR005175 -
Vivi7g04445 353 MobiDBLite consensus disorder prediction 315 338 - -
Vivi7g04445 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 329 IPR039605 GO:0003680
Vivi7g04445 353 MobiDBLite consensus disorder prediction 64 84 - -
Vivi7g04445 353 MobiDBLite consensus disorder prediction 15 150 - -
Vivi7g04445 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
Vivi7g04445 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 280 - -
Vivi7g04445 353 MobiDBLite consensus disorder prediction 111 132 - -
Vivi7g04445 353 Gene3D - 165 309 - -
Vivi7g04445 353 FunFam AT-hook motif nuclear-localized protein 1-like 165 296 - -
Vivi7g04445 353 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Vivi7g04445 353 SMART AT_hook_2 95 107 IPR017956 GO:0003677
Vivi7g04445 353 MobiDBLite consensus disorder prediction 302 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04445 Vivi-Chr7 114708333 114711810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04445 1 353 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.409 2.57e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04445 - - gmx:100799791 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04445 7 114708333 114711810 Vivi7g04445 7 114708333 114711810 ECH
Vivi7g04444 7 114707968 114711810 Vivi7g04445 7 114708333 114711810 PCT