LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g04410	ATGAACTCAATTGGTGATAATATTGTGATGGCTACAAGGAGAGAAAGTGTGAAAGAGGTTAACTCAAATGGTGTTAGTGATACAGTTTATGTTGCTGTGGCTAAAGATGTGAAAGATAGTAAATTGAATGTGATTTGGGCTATACAAAATTCTGGAGGAAAGAGAATTTGTATTCTTCATGTGCATGTGCCATCTCCTAAGATCCCTATGATGGGAGCTAAATTTCCAGCAAGTGCACTGACAAAGCAACAAGTTGATGCATACAGGAAAATAGAAAGTCAAGACATGCACAAGACTCTTGATGCTTACCTTCTTATCTCTCAAAGAATGGGGGTGAAGGCAGAAAAACTTCACATTGAAATGGATTGCATTGAAAAAGGGATTATAGAACTTGTCTCTAAATATAACATACAAAACCTTGTTATGGGAGCAGCTTCTGATAAGTACCATTCAAGGAGAATGACTGATCTCAGATCTAAGAAAGCCACCTATGTATGTGAACATGCTCCATCTTCTTGTCTTATCCAGTTCATCTGCAAAGGCTATCTTATACAGACAAGGAATACTCGTGCACTCAGGGATTGCGATTTGGATAAATATAGAGTAGAGGGAACATCTACTTTGATGGAGCAAATGCAAAACTCTGAAGTTGGTAACTCATCTCACTTGAGATCTAGATCAGTTTCACATGATCAAGATCAGTTATCTCAACATCATAGAGTAAGATCTATAAGCTCCTCTGTTGGAAGTGGAAGAAGCATGGCATCATCCTGTGCATCTTCACCAGAAACAAGTTGGAGTCCTTCACCTTTATCAGTTGAAACAGCACCAATTCCAAGTGATGGTAATGAGAGTGTGTTGGACTTGAAAATGAGTTGCTTATCAAGTATTAAAGAGGAAGATCTTCATCACAAATCACCTCCTAGTGTGCTGGATGGAGGAATGGATAGTGTTTATGATCAGCTTGAGCAAGCTATGGCTGAGGCTGAGAAGGCTAGATGGGAAGCATATCGAGAAACGGTTAGGCGTCGCAAAGCCGAAAAAGATCTCATTGATGCAATACGAAAGACTAATGACAACAATATCTTGTACCAAGAAGAGATGAAACTAAGGAAAGAGTTAGAGGAAGAACTACAAAAAGCAAAAGAAGAAATTCACAACATGAGAAGCCAAATAGACAAAGTCAATGAAAATCTCCAACTTGCCTTGGATCACAAGTCATCAACAGAGAATCAAATTGGTGAAGCCTTAACACAATCTCTTCAACTTTTTAATGAGTTTTCTTATTCAGAAATTGAAGAAGCAACTTGTAACTTCAATCCATCCTTAAAGATTGGTGAAGGCGGATACGGAAGTATATTCAAAGGTATCATTCGTCACACCGAGGTGGCTATAAAAATTTTGAGCCCCGACAGCACTCAAGGACCGTCGGAGTTTCAACAAGAGGTTAAAGTATTGAGCAAGTTAAGGCATCCAAATCTTATAACACTTATTGGAGTAAACCAAGAATCAAGAACTCTTGTTTATGAGTATTTACCAAATGGAAGCCTTGAAGATCATCTCAACTGCAAAGTCAAAACCACCTCTCCATTATCATGGAAGACACGAATTCGCATCGCGAGAGAACTATGTTCAGCTCTAATATTTCTCCATTCCAATAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAACATTCTCCTAGATGGAAACCTAGTAAGCAAGCTCAGCGACTTCGGGATCAGTCGAGTACTATCGCGCCAAGACGATTCTTCGAGCAACAATAAAAATACTACACAGTTTTGGATCACTAGTTTTGCAAAGGGAACATTTGCATACATGGATCCTGAATTCTTTGCAACAGGTGAACTTACTACAAAGTCAGATGTTTATTCATTTGGAATTTTGTTGTTGATGTTGGTAACTGGGAAATCAGCCTTAGGAATAAAGAATGAAGTGATGTATGGTTTAAATGGTGGAGAAGTGAAATCATTGTTGGATCCTTTGGCTGGAGATTGGCCTATTGTGGAAGGTGAAAAGTTGGTTCATTTGGGTTTGAAATGTTGTGATATGGATAGAAAATGTAGGCCTGAACTTTGTTCTGATGTGTGGAGGGTGTTGGAATCAATGAGGGGGTTGTGTTAG	2151	0.3896	MNSIGDNIVMATRRESVKEVNSNGVSDTVYVAVAKDVKDSKLNVIWAIQNSGGKRICILHVHVPSPKIPMMGAKFPASALTKQQVDAYRKIESQDMHKTLDAYLLISQRMGVKAEKLHIEMDCIEKGIIELVSKYNIQNLVMGAASDKYHSRRMTDLRSKKATYVCEHAPSSCLIQFICKGYLIQTRNTRALRDCDLDKYRVEGTSTLMEQMQNSEVGNSSHLRSRSVSHDQDQLSQHHRVRSISSSVGSGRSMASSCASSPETSWSPSPLSVETAPIPSDGNESVLDLKMSCLSSIKEEDLHHKSPPSVLDGGMDSVYDQLEQAMAEAEKARWEAYRETVRRRKAEKDLIDAIRKTNDNNILYQEEMKLRKELEEELQKAKEEIHNMRSQIDKVNENLQLALDHKSSTENQIGEALTQSLQLFNEFSYSEIEEATCNFNPSLKIGEGGYGSIFKGIIRHTEVAIKILSPDSTQGPSEFQQEVKVLSKLRHPNLITLIGVNQESRTLVYEYLPNGSLEDHLNCKVKTTSPLSWKTRIRIARELCSALIFLHSNKPHSIVHGDLKPSNILLDGNLVSKLSDFGISRVLSRQDDSSSNNKNTTQFWITSFAKGTFAYMDPEFFATGELTTKSDVYSFGILLLMLVTGKSALGIKNEVMYGLNGGEVKSLLDPLAGDWPIVEGEKLVHLGLKCCDMDRKCRPELCSDVWRVLESMRGLC	716

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g04410	716	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	50	175	-	-
	Vivi7g04410	716	MobiDBLite	consensus disorder prediction	210	284	-	-
	Vivi7g04410	716	SMART	serkin_6	439	709	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g04410	716	Gene3D	Transferase(Phosphotransferase) domain 1	512	714	-	-
	Vivi7g04410	716	Coils	Coil	315	339	-	-
	Vivi7g04410	716	Gene3D	Phosphorylase Kinase; domain 1	409	511	-	-
	Vivi7g04410	716	PANTHER	OS02G0152300 PROTEIN	29	713	-	-
	Vivi7g04410	716	ProSiteProfiles	Protein kinase domain profile.	439	716	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g04410	716	SUPERFAMILY	Protein kinase-like (PK-like)	420	709	IPR011009	-
	Vivi7g04410	716	Coils	Coil	360	398	-	-
	Vivi7g04410	716	CDD	STK_N	28	181	-	-
	Vivi7g04410	716	MobiDBLite	consensus disorder prediction	210	225	-	-
	Vivi7g04410	716	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	558	570	IPR008271	GO:0004672\|GO:0006468
	Vivi7g04410	716	MobiDBLite	consensus disorder prediction	239	279	-	-
	Vivi7g04410	716	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	411	511	-	-
	Vivi7g04410	716	ProSitePatterns	Protein kinases ATP-binding region signature.	445	466	IPR017441	GO:0005524
	Vivi7g04410	716	Gene3D	HUPs	28	176	IPR014729	-
	Vivi7g04410	716	Pfam	Protein kinase domain	443	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g04410	Vivi-Chr7	114341218	114344582	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g04410	25	714	U-box Gene Family	AT2G45910	44.520	0.0	595

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vivi7g04410		Pkinase	3.1e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g04410	-		-	tpra:123883511	1042.34