LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g04409	ATGAACTCAATTGGTGATAATATTGTGATGGCTACAAGGAGAGAAAGTGTGAAAGAGGTTAACTCAAATGGTGTTAGTGATACAGTTTATGTTGCTGTGGCTAAAGATGTGAAAGATAGTAAATTGAATGTGATTTGGGCTATACAAAATTCTGGAGGAAAGAGAATTTGTATTCTTCATGTGCATGTGCCATCTCCTAAGATCCCTATGATGGGAGCTAAATTTCCAGCAAGTGCACTGACAAAGCAACAAGTTGATGCATACAGGAAAATAGAAAGTCAAGACATGCACAAGACTCTTGATGCTTACCTTCTTATCTCTCAAAGAATGGGGGTGAAGGCAGAAAAACTTCACATTGAAATGGATTGCATTGAAAAAGGGATTATAGAACTTGTCTCTAAATATAACATACAAAACCTTGTTATGGGAGCAGCTTCTGATAAGTACCATTCAAGGAGAATGACTGATCTCAGATCTAAGAAAGCCACCTATGTATGTGAACATGCTCCATCTTCTTGTCTTATCCAGTTCATCTGCAAAGGCTATCTTATACAGACAAGGAATACTCGTGCACTCAGGGATTGCGATTTGGATAAATATAGAGTAGAGGGAACATCTACTTTGATGGAGCAAATGCAAAACTCTGAAGTTGGTAACTCATCTCACTTGAGATCTAGATCAGTTTCACATGATCAAGATCAGTTATCTCAACATCATAGAGTAAGATCTATAAGCTCCTCTGTTGGAAGTGGAAGAAGCATGGCATCATCCTGTGCATCTTCACCAGAAACAAGTTGGAGTCCTTCACCTTTATCAGTTGAAACAGCACCAATTCCAAGTGATGGTAATGAGAGTGTGTTGGACTTGAAAATGAGTTGCTTATCAAGTATTAAAGAGGAAGATCTTCATCACAAATCACCTCCTAGTGTGCTGCAGGATGGAGGAATGGATAGTGTTTATGATCAGCTTGAGCAAGCTATGGCTGAGGCTGAGAAGGCTAGATGGGAAGCATATCGAGAAACGGTTAGGCGTCGCAAAGCCGAAAAAGATCTCATTGATGCAATACGAAAGACTAATGACAACAATATCTTGTACCAAGAAGAGATGAAACTAAGGAAAGAGTTAGAGGAAGAACTACAAAAAGCAAAAGAAGAAATTCACAACATGAGAAGCCAAATAGACAAAGTCAATGAAAATCTCCAACTTGCCTTGGATCACAAGTCATCAACAGAGAATCAAATTGGTGAAGCCTTAACACAATCTCTTCAACTTTTTAATGAGTTTTCTTATTCAGAAATTGAAGAAGCAACTTGTAACTTCAATCCATCCTTAAAGATTGGTGAAGGCGGATACGGAAGTATATTCAAAGGTATCATTCGTCACACCGAGGTGGCTATAAAAATTTTGAGCCCCGACAGCACTCAAGGACCGTCGGAGTTTCAACAAGAGGTTAAAGTATTGAGCAAGTTAAGGCATCCAAATCTTATAACACTTATTGGAGTAAACCAAGAATCAAGAACTCTTGTTTATGAGTATTTACCAAATGGAAGCCTTGAAGATCATCTCAACTGCAAAGTCAAAACCACCTCTCCATTATCATGGAAGACACGAATTCGCATCGCGAGAGAACTATGTTCAGCTCTAATATTTCTCCATTCCAATAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAACATTCTCCTAGATGGAAACCTAGTAAGCAAGCTCAGCGACTTCGGGATCAGTCGAGTACTATCGCGCCAAGACGATTCTTCGAGCAACAATAAAAATACTACACAGTTTTGGATCACTAGTTTTGCAAAGGGAACATTTGCATACATGGATCCTGAATTCTTTGCAACAGGTGAACTTACTACAAAGTCAGATGTTTATTCATTTGGAATTTTGTTGTTGATGTTGGTAACTGGGAAATCAGCCTTAGGAATAAAGAATGAAGTGATGTATGGTTTAAATGGTGGAGAAGTGAAATCATTGTTGGATCCTTTGGCTGGAGATTGGCCTATTGTGGAAGGTGAAAAGTTGGTTCATTTGGGTTTGAAATGTTGTGATATGGATAGAAAATGTAGGCCTGAACTTTGTTCTGATGTGTGGAGGGTGTTGGAATCAATGAGGGGGTTGTGTTAG	2154	0.39	MNSIGDNIVMATRRESVKEVNSNGVSDTVYVAVAKDVKDSKLNVIWAIQNSGGKRICILHVHVPSPKIPMMGAKFPASALTKQQVDAYRKIESQDMHKTLDAYLLISQRMGVKAEKLHIEMDCIEKGIIELVSKYNIQNLVMGAASDKYHSRRMTDLRSKKATYVCEHAPSSCLIQFICKGYLIQTRNTRALRDCDLDKYRVEGTSTLMEQMQNSEVGNSSHLRSRSVSHDQDQLSQHHRVRSISSSVGSGRSMASSCASSPETSWSPSPLSVETAPIPSDGNESVLDLKMSCLSSIKEEDLHHKSPPSVLQDGGMDSVYDQLEQAMAEAEKARWEAYRETVRRRKAEKDLIDAIRKTNDNNILYQEEMKLRKELEEELQKAKEEIHNMRSQIDKVNENLQLALDHKSSTENQIGEALTQSLQLFNEFSYSEIEEATCNFNPSLKIGEGGYGSIFKGIIRHTEVAIKILSPDSTQGPSEFQQEVKVLSKLRHPNLITLIGVNQESRTLVYEYLPNGSLEDHLNCKVKTTSPLSWKTRIRIARELCSALIFLHSNKPHSIVHGDLKPSNILLDGNLVSKLSDFGISRVLSRQDDSSSNNKNTTQFWITSFAKGTFAYMDPEFFATGELTTKSDVYSFGILLLMLVTGKSALGIKNEVMYGLNGGEVKSLLDPLAGDWPIVEGEKLVHLGLKCCDMDRKCRPELCSDVWRVLESMRGLC	717

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g04409	717	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	559	571	IPR008271	GO:0004672\|GO:0006468
	Vivi7g04409	717	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	50	175	-	-
	Vivi7g04409	717	MobiDBLite	consensus disorder prediction	210	284	-	-
	Vivi7g04409	717	Coils	Coil	361	399	-	-
	Vivi7g04409	717	Gene3D	Phosphorylase Kinase; domain 1	410	512	-	-
	Vivi7g04409	717	Gene3D	Transferase(Phosphotransferase) domain 1	513	715	-	-
	Vivi7g04409	717	ProSitePatterns	Protein kinases ATP-binding region signature.	446	467	IPR017441	GO:0005524
	Vivi7g04409	717	CDD	STK_N	28	181	-	-
	Vivi7g04409	717	SUPERFAMILY	Protein kinase-like (PK-like)	421	710	IPR011009	-
	Vivi7g04409	717	MobiDBLite	consensus disorder prediction	210	225	-	-
	Vivi7g04409	717	MobiDBLite	consensus disorder prediction	239	279	-	-
	Vivi7g04409	717	Pfam	Protein kinase domain	444	700	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g04409	717	Gene3D	HUPs	28	176	IPR014729	-
	Vivi7g04409	717	ProSiteProfiles	Protein kinase domain profile.	440	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g04409	717	Coils	Coil	316	340	-	-
	Vivi7g04409	717	PANTHER	OS02G0152300 PROTEIN	29	714	-	-
	Vivi7g04409	717	SMART	serkin_6	440	710	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g04409	717	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	412	512	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g04409	Vivi-Chr7	114341218	114344584	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g04409	25	715	U-box Gene Family	AT2G45910	44.324	0.0	595

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vivi7g04409		Pkinase	3.1e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g04409	-		-	tpra:123883511	1046.57