Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04397 ATGCATTCCGGTGGTGGTGGTCCTGGCCGGCCGGCGGGTCGGCCATCTACTTCGGCAGCTGCTTCGCCTTCCTCTTCATCTTCAGCATCACAGTTAGGATTTGAATCTTTGCAGCAGCAGCAACACCATCAACAGCAACAACAGCAACAGCAGCAGCAACAACACCAGCAACAGCAGCAGCTAGGTTCTAGACAGACATTTCAACAGCAGCTGCTTAGAAAGCCTGAAGGAAATGAAGCATTCTTAGCTTATCAAGCAGGGCGTCAAGGTGTATTTGGGAGTAGCAATTTCCAACAACCCAATGCTATGCAACTGCCCCAGCAGCCTAGAAAATTTACCGATTTAGCTCAGCAACATGGTACCAATCAAGATGCTCAGCTCAGAGGTCAAGATAGCGAGCAGCAGCAAATGGTAAATCCTGTCCACCAAGCATACCTTCAATATGCTTTCCAGGCTGCGCAACAAAAGCCTACTATGGGAATTCATTCGCAACAGCATGCTAAGATGGGAATGTTAAACCCTGCATCTGTAAAAGATCAGGAAATGCGCATGGGAAATCTGAAAATGCAGGACATTATGGCAATGCAGGCAATGAATCAAGCTCAAGGATCGTCTTCTAGGAATTCATCTGAACACAATGTCCGTGGAGAAAAGCAGATGGAGCAAGGACAACAGATAAGACCCATTCAAGCACCAGAAGCACAGCACGGCATCCAAAATGTTATGAACAGCCAGATTGCAGTAGCTGCTCAATTGCAAGCCATGCAGGCATGGGCACGTGAGAATAATATTGATTTATCACATCCTACAAATGCACATTTAATGGCAAAGCTCATTCCACTGATGCAGTCAAGGATGGCCCTACCACCAAAAACCAGTGAGAGCAACATTGGCGCACAGTCGTCATCGGTCCCTGTTTCAAAGCAGCAGGTTAATTCTCCAGCAGTTGCAAGTGAGAGCTCGGCGCATGCTAATTCATCAAGTGACATGTCTGGGCAGTCAGGTTCATCGAAAGCCAGACAGACAGTTCCTCCCAGCCATCTCGGCTCAATGGCAAATGCTGGTACAGCTGGTCAGTCCAGCGACATGGCCATGCAGCAATTCAACGTTCATGGTAAAGAGTCTCAAGCTCCTCAGAGGCAACAAGTAAAAGCTGGAAATGGAATGCCCTCTTATCATTCTCAGCAATCCTCTGCAACCATGAACCTAGGTGCAGACCATCCTTTGAATGCAAAAGGTTCATCTTCTGGTACAGAACCTCCTCAAATGCAGTACCCGAGGCAGTTAAACCAATCTACGACACAGGCTGGAGGCCCAACAAAAGAAGGGGGTTTGGGAAATTCTGCTAAATCTCAAGGGGCTCCAGCTCAGATGCATGAGCGACAAAATGGATTTACAAAACAACAGCTACATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGTTAAAGAAAGGAGAAGGTACCCTGCCTCAAGAACTTCTTCAAGCTATCACTCCACCACCTCTTGAGTTGCAGGCAAAACACCCAAACCATCCTGCAGGAGGACAAAATCAAGTCAAATCTGCTGGAAATATTGTGCCAGAACAACCACGGCATGTTGAGGCCAATGAATCACAATCTAATCCTGCTGTTAATGGACCCAGTTCTGTAAAGCAGGAATCCTTTTCAAGAGACGAGAAATCTGCTCCGCCACCAGTTCATATTCAAGCTGTTGTGCCGTCTGTATCAAAGGAATCTGCTTCAACATCATCTGCTGGAAAGGAAGAGCAGAAACCAATTGGATCCTCTATTAAGCCAAAGCAGGACAATGAACATGGAAATAACAGTACTCCTGTTAGAAATGAGTTGGCATTAGATAGGGGGAAGGCAATTGCACCACAAGCCTCTGTATCTGACACAACGCAAATTACAAAACCGGCACAGGCAAACACTGTTTCTCAGCCAAAGGATGTGGGACCAACCAGAAAATATCATGGACCCCTGTTTGATTTTCCGTTCTTCACTAGGAAACATGACTCTTTTGGGTCATCTATGATGGTAAACAACAGCAATAATTTATCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGCATAGAAGTACTTGGCAAGAAGCGAACAGAAAATTTAAAGAAGATTGAAGGCTTATTGGCTGTAAACTTAGAGAGGAAACGAATTAGGCCTGACCTTGTGTTGAGACTGCAAATTGAAGAGAAAAAGCTCCGTCTTTTAGATCTTCAGGCACGTTTGAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGTTGTGTGAACGCCAGAGGGTGGAACTTGTTAGACAAGTACAGGCAACTCAAAAAGCTGCTAGGGAGAAGCAACTCAAATCTATATTTCTATGGCGTAAGAAACTTCTTGAGGCACACTGGGCAATTCGTGATGCCCGTACTGCCCGTAACAGGGGGGTGGCCAAATATCATGAGAGGATGTTGCGGGAATTCTCAAAACATAAAGATGACGATAGAAATAGAAGGATGGAAGCCCTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAACAGCAGACTAGCATTCCGGGTGATGCTGCAGAGAGATATGAAGTTCTTTCATCTTTCTTATCCCAGACTGAGGAGTATCTACATAAACTAGGAAGTAAGATAACAGTTGCCAAAAACCAACAAGAAGTAGAAGAGGCAGCAAAAGCAGCTGCTGCTGCTGCAAGGTTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCTGCTGCTTGTGCAGGAGAGGAAGTGATGATTAGGAATCGTTTTCTCGAGATGAATGCTCCTAGAGACAGTTCATCTGTCAACAAGTATTACAACCTCGCACATGCGGTGAATGAAATGGTCGTAAGACAACCATCCCTGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGATTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTAGCTGATGAGATGGGTCTCGGTAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGTCCACATCTTATAATAGTCCCAAATGCAGTTATGGTTAACTGGAAGAGTGAATTATATAAGTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAAGATTATCGAACAAAATTATTTCATCAAGTTTCTGCTCTGAAGTTTAATGTCTTGGTGACTACTTACGAGTTCATCATGTATGACCGGGCAAAACTTTCAAAAATTGATTGGAAGTATATTGTGATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTTTAGCACGTGACCTTGATAGGTATCGTTGTCAAAGACGTCTGCTTTTGACAGGAACACCGTTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTCCCTGAGGTTTTTGATAATAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAAGAAGGTCCTACTCAAAATGCAGAGGACGATTGGCTCGAGACAGAGAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGCCGTGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGACTCCATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTACGACTGGGTCAAATCAACTGGTACTCTTCGTCTTGATCCCGAGGATGAGGAACGTAAGCTTCAGAGAAATCCTAACTACCAGGTGAAACAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGGAAAACATGCAATCATCCATTGCTTAATTATCCATTCTTCAGTGATTTATCTAAAGAGTTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTAGATAGGATCCTCATAAAACTTCAAAGAACCGGACATCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTCGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAAATGACTTCAATGGCCCTGATTCAGACTGTTTCATTTTCTTGCTTAGCATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGACCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTTGCCAGAGCTCATCGTATTGGGCAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGATAAAATCCCTAGTCATCAGAAGGAAGATGAAATGAGAGGTGGAGGCACTGCTGATTTGGAGGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTCATAAGAAACAATATTCAGCAATATAAGATAGATATGGCTGATGAGGTAATTAATGCTGGGCGTTTCGATCAAAGAACAACACATGAAGAAAGGCGTTTGACTTTGGAGACATTATTACACGATGACGAGAGGTATCAAGAAACTGTCCATGATGTGCCGTCATTGCAGGAGGTAAATCGCATGATTGCTAGGAGCGAGGAGGAAGTGGAACTGTTTGATCAAATGGACGATGAACTGGATTGGATTGATGATATGACACGGTATGATCATGTGCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATACTGCTGTTGCTGCTTTATCAAAAAGACCATTGAAGAAAAGTTTATTAGGTGGCAGTGTTGCCGTGGATACAAGTGAACTTGGTTCAGAAAGAAAAAGAGGACGACCCAAAAAACATACTAGTTATAAAGAACTGGAAGATGAAGATTTGGAATACTCTGAAGCAAGCTTTGAAGAAAGAAATGGGTCTGCAAATGAAGAAGGGGAAACAGGAGATTTGGAAGATGATGGGTATAGTGGAGCCGATGGAGCTCAGCCCATTGATAAAGATCAGATGGAAGATGGTCTATGTGATGGTGGATATGAATTTTCTCAATCTTTAGAAATTGCCAGAAATAATCAGGTGGTTCAAGAAGCTGGTTCCTCTGGATCTTCCTCTGACGGTAAAAAAGTGACACAGATAGTATCACCATCAATTTCCTCTCAGAAATTTGGCTCCCTGTCAGCATTAGATGCCCGGCCAGGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCAATGTCTGTTGATTCTCACATGGAGCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTTTGCAGAAGCCAAAGATTAAACGCAAACGTAGTCTTCGCGTTCGACCCCGTCACGCCTCTGAAAAACCTGAAGAAAGATCTGGTAGTGAAATGATACCTCGTTTGTCAGTCCAAGCAGACCGTAAATATCAAGCACAGCTGAGGACTGACCTAGAATCAAAATCACACGTAGATTCAAATGCCAGCAGGAATGATCAAAACACTTCATTAAAAAATAAGCGAACTTTACCTTCAAGGAGGGTTGCTAATACATCCAAATTACATGGTTCACCAAAACCTACTCGTTTGAATACCATATCTGCTCCTTCAGAGGATGGTGGCGAACATTCCAGGGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGATCCTCTGCTCATGGCTCTAGGATGACAGAAATCATTCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTTCAAAGGAGAATAGACAAGGAAGGCCATCAAATTGTACCTCTGTTAACAGATTTGTGGAAGAGGATTGAGAATTCTGGGTTCAGTGGTGGGTCTGGGAATAACTTGTTGGATCTACGGAAGATTGATCAGCGGATTGATAAATTGGAGTATACTGGAGCCACGGATCTTGTATTTGATGTGCAATTCATGTTAAAGAGCGCAATGCATTATTATGGTTTTTCCCTTGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATATTGAAAATTGCATTTCCTGATACCGACTTCCGAGACGCAAGAAGTGCACTCTCTTTTGCTGGTCCAGTTTCTGCCTCAACCACCGTATCATCTCCGAGGCAAGCAGCTGTTGGGCAAGGCAAGAGGCACAAGCTGATGAACGAGGTGGAACCTGATCCCCACCCTTCACAAAGACCACTGCAACGCGGATCAGCTTCTAGTGGAGAAAACAGTAGGATTAGAGTCCGTATGCCACCAAAGGAATCAAAAACCGGAAATGTTAGCAGCAGCAGTATACGAGAGCAACCCCGGCTGCAGGATGATTCTCCACCACTACTGACTCATCCAGGTGAACTAGTCGTGTGCAAGAAAAGAAGAAACGACAGGGAGAAATCAACGGTGAAGACTAGGACTGGTCCTGTTTCGCCGCCTATGAGAAGTCCTGGGGCAGGTTCAGTCCCCAAAGATAGATTAACTCAACAGACTCAAGGATGGGTTGGCCAACCATCTCAACAACCAAATGGGTCAGTTGGATGGGCTAATCCTGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGAAGACCAAGTCATATGTAA 6630 0.4342 MHSGGGGPGRPAGRPSTSAAASPSSSSSASQLGFESLQQQQHHQQQQQQQQQQQHQQQQQLGSRQTFQQQLLRKPEGNEAFLAYQAGRQGVFGSSNFQQPNAMQLPQQPRKFTDLAQQHGTNQDAQLRGQDSEQQQMVNPVHQAYLQYAFQAAQQKPTMGIHSQQHAKMGMLNPASVKDQEMRMGNLKMQDIMAMQAMNQAQGSSSRNSSEHNVRGEKQMEQGQQIRPIQAPEAQHGIQNVMNSQIAVAAQLQAMQAWARENNIDLSHPTNAHLMAKLIPLMQSRMALPPKTSESNIGAQSSSVPVSKQQVNSPAVASESSAHANSSSDMSGQSGSSKARQTVPPSHLGSMANAGTAGQSSDMAMQQFNVHGKESQAPQRQQVKAGNGMPSYHSQQSSATMNLGADHPLNAKGSSSGTEPPQMQYPRQLNQSTTQAGGPTKEGGLGNSAKSQGAPAQMHERQNGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLQAITPPPLELQAKHPNHPAGGQNQVKSAGNIVPEQPRHVEANESQSNPAVNGPSSVKQESFSRDEKSAPPPVHIQAVVPSVSKESASTSSAGKEEQKPIGSSIKPKQDNEHGNNSTPVRNELALDRGKAIAPQASVSDTTQITKPAQANTVSQPKDVGPTRKYHGPLFDFPFFTRKHDSFGSSMMVNNSNNLSLAYDVKDLLFEEGIEVLGKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRVELVRQVQATQKAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKHKDDDRNRRMEALKNNDVDRYREMLLEQQTSIPGDAAERYEVLSSFLSQTEEYLHKLGSKITVAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNEMVVRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDYRTKLFHQVSALKFNVLVTTYEFIMYDRAKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPTQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGGGTADLEDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDDERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDDMTRYDHVPKWIRANTKEVNTAVAALSKRPLKKSLLGGSVAVDTSELGSERKRGRPKKHTSYKELEDEDLEYSEASFEERNGSANEEGETGDLEDDGYSGADGAQPIDKDQMEDGLCDGGYEFSQSLEIARNNQVVQEAGSSGSSSDGKKVTQIVSPSISSQKFGSLSALDARPGSISKRMTDELEEGEIAMSVDSHMEHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHASEKPEERSGSEMIPRLSVQADRKYQAQLRTDLESKSHVDSNASRNDQNTSLKNKRTLPSRRVANTSKLHGSPKPTRLNTISAPSEDGGEHSRESWEGKPINSSGSSAHGSRMTEIIQRRCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGFSGGSGNNLLDLRKIDQRIDKLEYTGATDLVFDVQFMLKSAMHYYGFSLEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFAGPVSASTTVSSPRQAAVGQGKRHKLMNEVEPDPHPSQRPLQRGSASSGENSRIRVRMPPKESKTGNVSSSSIREQPRLQDDSPPLLTHPGELVVCKKRRNDREKSTVKTRTGPVSPPMRSPGAGSVPKDRLTQQTQGWVGQPSQQPNGSVGWANPVKRLRTDSGKRRPSHM 2209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04397 2209 PANTHER SNF2/RAD54 HELICASE FAMILY 735 1675 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 627 655 - -
Vivi7g04397 2209 SMART bromo_6 1909 2024 IPR001487 GO:0005515
Vivi7g04397 2209 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1001 1165 IPR014001 -
Vivi7g04397 2209 Coils Coil 1535 1555 - -
Vivi7g04397 2209 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1319 1496 IPR001650 -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 2130 2146 - -
Vivi7g04397 2209 SMART QLQ_2 463 500 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 1607 1682 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 534 553 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 1897 1911 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 1765 1786 - -
Vivi7g04397 2209 Pfam SNF2-related domain 992 1295 IPR000330 GO:0005524|GO:0140658
Vivi7g04397 2209 SUPERFAMILY Bromodomain 1963 2022 IPR036427 GO:0005515
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 628 651 - -
Vivi7g04397 2209 Gene3D - 1228 1438 IPR027417 -
Vivi7g04397 2209 ProSiteProfiles QLQ domain profile. 464 500 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 1 67 - -
Vivi7g04397 2209 SMART helicmild6 1345 1429 IPR001650 -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 1759 1911 - -
Vivi7g04397 2209 Coils Coil 739 763 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 289 462 - -
Vivi7g04397 2209 CDD SF2_C_SNF 1308 1439 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 575 613 - -
Vivi7g04397 2209 FunFam ATP-dependent helicase BRM 980 1227 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 2040 2209 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 534 613 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 1841 1885 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 503 522 - -
Vivi7g04397 2209 FunFam ATP-dependent helicase BRM 1228 1438 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 202 226 - -
Vivi7g04397 2209 FunFam Brahma1 1911 2034 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 17 67 - -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 2100 2115 - -
Vivi7g04397 2209 Pfam Helicase conserved C-terminal domain 1318 1429 IPR001650 -
Vivi7g04397 2209 Gene3D - 1911 2038 IPR036427 GO:0005515
Vivi7g04397 2209 SMART ultradead3 985 1173 IPR014001 -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 1609 1629 - -
Vivi7g04397 2209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1218 IPR027417 -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 1826 1840 - -
Vivi7g04397 2209 Gene3D - 980 1227 IPR038718 -
Vivi7g04397 2209 MobiDBLite consensus disorder prediction 2165 2189 - -
Vivi7g04397 2209 Pfam QLQ 465 498 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi7g04397 2209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1559 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04397 Vivi-Chr7 114004458 114015025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04397 1010 1454 RAD5 or RAD16-like Gene Family AT1G02670 26.104 7.37e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi7g04397 SNF2_N 4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04397 K11647 - gmx:100807104 3417.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04397 7 114004458 114015025 Vivi7g04397 7 114004458 114015025 ECH
Vivi7g04397 7 114004458 114015025 Vivi7g04397 7 114004458 114015025 PCT