Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04391 ATGGGCTTCCCAGTAGGTTACGCCGAAGTATTCTTCCCAAACCTACTACTCCACACTCTAACCCTCCTCGGCCTCCTCCGCAACCTCGTCTTCCACCTCTTTCACTTCCTCGGCCTCTCCGAATTCCTCGAAACCGACGTTATCTGGCCCCACACCAACGTAGAAACCTCTCTCACGCATGAACCTACCAAACCCCCCTCCGTCTCAGCATCCCTAATCAGAGACCTCTTACCGGAGACAAAGTACGGCGACCTCGCCGGAGTCGAAGAAGGCTGTTCCTGCGCGGTTTGTCTGTTGGAATTCTCTACGGAAGAAGAGATCCGGTGTTTGAGAAACTGTAGACATATATTTCATAGAAACTGCGTGGACCGTTGGATTGATCTCGATCAGAAAAGTTGTCCTCTTTGTAGAAGAGCTTTTGTGCCTGATGAGATGATGGAGGATTATAATCAACGGCTTTGGGAGGCTTCTGGTGTTACTGAGTTGTATAGTTATGCAGACTACACTTCTTCTTTTTAA 519 0.4894 MGFPVGYAEVFFPNLLLHTLTLLGLLRNLVFHLFHFLGLSEFLETDVIWPHTNVETSLTHEPTKPPSVSASLIRDLLPETKYGDLAGVEEGCSCAVCLLEFSTEEEIRCLRNCRHIFHRNCVDRWIDLDQKSCPLCRRAFVPDEMMEDYNQRLWEASGVTELYSYADYTSSF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04391 172 SUPERFAMILY RING/U-box 93 144 - -
Vivi7g04391 172 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Vivi7g04391 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 28 156 - -
Vivi7g04391 172 Pfam Ring finger domain 93 137 IPR001841 -
Vivi7g04391 172 SMART ring_2 94 136 IPR001841 -
Vivi7g04391 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04391 Vivi-Chr7 113852299 113853341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04391 1 160 C3H Transcription Factor Family AT1G63840 44.512 6.64e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04391 K16281 - gmx:100790975 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04391 7 113852299 113853341 Vivi7g04391 7 113852299 113853341 ECH
Vivi7g04391 7 113852299 113853341 Vivi7g04391 7 113852299 113853341 PCT