Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04385 ATGTCTGCTGTTAGGTTTTCAAATGTAAGGTTTCTACATAGTTCAATCAAGGGTTATTTCAATTTCCAAAATGTTCAAAATTACCCTAATAGGGCTTTGAATCTTGCAAGAGTTTCGAGTTTTTCGATTGATTTGTCGAGCCGTCGTTATTCCAAAGGAAAGTTTGCTCAAAATCAGTTTAGCAATTTGGGTTCTGTATCTGGGGAAAGGGGTTTGAATTCTGTGTTTGAATCTAGATTCTCTAGGGTATGTTACCGGAGGAGTGTTGGATTGTTGAATGTTGCTTCGATGAGTCATGTGTTGAATTTTCGAATGTACTCGTCGCCGTCTTTGGGTGGGAAAGGAAGCGGGAATAATGAAACGGAAGTGGCTGCTAGTGGTAACGATGGTGGTGGTTCGGTTGTTTCGGGTGATTTGGTTGAGAGGGTGAAGGATACATGGAAGAGTGTTGCGGAGACGGCTTCTTATGCTGGGGAGAAGATTAAAGAAACTTCTGATGATCTTACTCCGTATGTTCAACAGTTGCTTGATTCACATCCTTATCTTAATATGGTGGTTGTTCCGGTTGGTGGTACTTTAACTGCCACGGTAATAGGTTGGTTCTTTTTGCCGAGGATTTTGAGGAGATTTCACAAATATGGAATGCAAGGTCCTGTTGCTCTATTTCAAGGAGGCGTGTCTGGGGAGCCAGTTCCGTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTAGTTACCTTCTTGGCGTTCTCACAAATTGCTGTAATGGTAGCTCCAACAGCTATAGCATCTCAATATCTTGCTCCCACTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGAACTTTGTCCAGTCAAAGTGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGACGTACTCGGCAATGTGTTCAGTGGTTTATCCATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATTAAAGCTGGATCGATAGAAGGTCAAGTGCTGGAAATTGGTCTTACTAGCACATCATTGCTGAGTCCTGAGAAGTTCCCAGTCATTGTGCCAAATTCCTTTTTTTCAAGCCAGGTGATTGTGAACAAGTCCCGTGCTGGTTATCGTGCCATTATTACCAAAATCCCCCTGCAAATTGAGGATTTAAGTAAGATTCCCCATATATCAAATGATGTAAAAAGCATGTTAACATCAAATGCAAAAGTTTTCCTAGGAAAAGATGTTCCCTACTGTTTCTTGTCACGTATTGAAAGTTCATTTGCAGAACTTACTCTTGGATACAACCTCAAGCACATGCGCAAAGATGAGTTCTACGCTGCAGAACAAGATATTCTCCTGCAAGCAGTTCAGGTCATTAAGAATCATGGTGTTGCTCTTGGCAGCACATGGAATGACACTAAGTAA 1587 0.4165 MSAVRFSNVRFLHSSIKGYFNFQNVQNYPNRALNLARVSSFSIDLSSRRYSKGKFAQNQFSNLGSVSGERGLNSVFESRFSRVCYRRSVGLLNVASMSHVLNFRMYSSPSLGGKGSGNNETEVAASGNDGGGSVVSGDLVERVKDTWKSVAETASYAGEKIKETSDDLTPYVQQLLDSHPYLNMVVVPVGGTLTATVIGWFFLPRILRRFHKYGMQGPVALFQGGVSGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAVMVAPTAIASQYLAPTWRGAVILSFVWFLHRWKTNVFARTLSSQSVLGLDREKMLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVLEIGLTSTSLLSPEKFPVIVPNSFFSSQVIVNKSRAGYRAIITKIPLQIEDLSKIPHISNDVKSMLTSNAKVFLGKDVPYCFLSRIESSFAELTLGYNLKHMRKDEFYAAEQDILLQAVQVIKNHGVALGSTWNDTK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04385 528 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 274 358 IPR011014 GO:0016020
Vivi7g04385 528 Gene3D - 375 423 IPR023408 -
Vivi7g04385 528 Gene3D - 275 374 - -
Vivi7g04385 528 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 140 523 - -
Vivi7g04385 528 SUPERFAMILY Sm-like ribonucleoproteins 359 424 IPR010920 -
Vivi7g04385 528 Pfam Mechanosensitive ion channel 317 519 IPR006685 GO:0016020|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04385 140 527 Mechanosensitive Ion Channel Family AT4G00290 66.495 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04385 K22047 - gmx:100814954 743.421