Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04378 ATGTCATTCTACGACCCATCTTTCTTCAACACTCAACTCTCCAAACAAACCTCAATCTTCGGTCTCCACCTCTGGGTCATCATCGGAATCCTCGTCGGTTCCTTCATCGTCATAACCCTCTTCCTCATCTCCCTCTGTCTCACCTCCCGCCGCCGCAAAAACCACCACCACCACCACCACAAAACCAACCTCAACCTCAACCTCAACACCCTCACTCCTATCGTCTCCAAGGAAATTCAAGAGATCAGACAAACCCCTCCGAAGCCTGAGATCCAGGCCATTGACATGGTGAAACTGGAAATTCACCGACATGTGTCGACCAGTGGAGAGAGTAGAGGAACTTCTGGTAGTGTGTGTGAAACAGTGTCGTCTTCGCGTGGAAGTATGGGACCGGAAGTTTCGCATCTTGGGTGGGGGAGATGGTATACGCTTAGAGAACTTGAAGCTGCTACTAATGGTTTGTGTGAAGAGAGTGTTATTGGGGAAGGTGGTTATGGGATTGTTTACAAAGGTGTTCTAACTGATGGTACCAGAATTGCTGTTAAGAATCTCTTGAATAACAAAGGCCAAGCTGAGAGAGAATTTAGAGTTGAGGTAGAAATAATCGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCACACAGGATGCTTGTGTATGAATATGTTGACAACGGCAATCTAGACCAATGGCTGCACGGGGATGTTGGACCTGTGAGTCCTATGACTTGGGATATCCGGATGAAAATTTTACTAGGCACAGCAAAAGGACTGGCTTATCTTCACGAGGGTCTTGAACCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATACTCATCGACCGCCAATGGAACGCCAAGGTTTCTGATTTCGGTCTTGCTAAGCTTCTGGATTCTGACCACAGTTTTGTCACGACTCGAGTCATGGGGACGTTTGGTTATGTTGCACCCGAGTACGCTTGCACCGGAATGCTGAATGAGAGGAGTGACGTGTATAGCTTTGGGATACTCATCATGGAAATAATCAGCGGGAGAAATCCCGTTGATTATAGCAGACCAAAAGAAGAGGTTAACTTAATTGAATGGTTAAAAGATATGGTTGGCAGTCGAAGATCCGAGGAAGTAGTTGATCCTAAGCTTTCCGAGAAGCCGTCTTTAAAGGCTCTCAAACGAGCTTTGTTGATTGCTCTTCGATGTGTTGATCCTGATTCCTCAAAAAGGCCTAAAATGGGACATGTGATCCACATGCTTGAAGCTGACGACGTCCTATTTCGCGAGGATCGAAGGAACGCCGGAGAATCTTCTCGTTCTCAACGTAACTATCAACGAGACCACAATGGTTTGAGTATAGATAAAAATCAGATAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAGTAGTAGTAGAAGTCACCATGAGCCTACTAGGTGGAGAAGATGA 1467 0.4608 MSFYDPSFFNTQLSKQTSIFGLHLWVIIGILVGSFIVITLFLISLCLTSRRRKNHHHHHHKTNLNLNLNTLTPIVSKEIQEIRQTPPKPEIQAIDMVKLEIHRHVSTSGESRGTSGSVCETVSSSRGSMGPEVSHLGWGRWYTLRELEAATNGLCEESVIGEGGYGIVYKGVLTDGTRIAVKNLLNNKGQAEREFRVEVEIIGRVRHKNLVRLLGYCVEGAHRMLVYEYVDNGNLDQWLHGDVGPVSPMTWDIRMKILLGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNAKVSDFGLAKLLDSDHSFVTTRVMGTFGYVAPEYACTGMLNERSDVYSFGILIMEIISGRNPVDYSRPKEEVNLIEWLKDMVGSRRSEEVVDPKLSEKPSLKALKRALLIALRCVDPDSSKRPKMGHVIHMLEADDVLFREDRRNAGESSRSQRNYQRDHNGLSIDKNQIGGEITDQSEDDSSSRSHHEPTRWRR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04378 488 MobiDBLite consensus disorder prediction 108 126 - -
Vivi7g04378 488 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Vivi7g04378 488 MobiDBLite consensus disorder prediction 437 488 - -
Vivi7g04378 488 MobiDBLite consensus disorder prediction 106 126 - -
Vivi7g04378 488 MobiDBLite consensus disorder prediction 471 488 - -
Vivi7g04378 488 PANTHER OS01G0323000 PROTEIN 8 447 - -
Vivi7g04378 488 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Vivi7g04378 488 Gene3D Transferase(Phosphotransferase) domain 1 230 441 - -
Vivi7g04378 488 Pfam Protein kinase domain 157 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g04378 488 SMART serkin_6 154 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g04378 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Vivi7g04378 488 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Vivi7g04378 488 Gene3D Phosphorylase Kinase; domain 1 132 229 - -
Vivi7g04378 488 MobiDBLite consensus disorder prediction 449 470 - -
Vivi7g04378 488 ProSiteProfiles Protein kinase domain profile. 154 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g04378 488 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Vivi7g04378 488 CDD STKc_IRAK 160 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04378 Vivi-Chr7 113709598 113712421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04378 26 476 Trihelix Transcription Factor Family AT5G38560 38.197 6.14e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vivi7g04378 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04378 - - gmx:100777348 712.22