Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04377 ATGGTATCCGTAAACCCTAATCAAACACAAGCCTTCTACTTCTTCGATCCTTCAAACATGGGTCTTCCCGGCGTCAACCAACTCCCACCACCGCCACAACCACCTACTACCGCCGCCGCATCTACCACCTCCGAGGATCCGAATAAGAAGATCCGAAAACCGTATACGATTACTAAATCTAGAGAGAGTTGGACTGATCAGGAGCATGACAAGTTTCTAGAAGCTCTCCAATTATTTGAACGTGACTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGATACGGAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAATGGAACAAGTGAGCACGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCAAAAAACGTCCCTACTGCGTCCCTAGTCACTGGGCCATTGCAATCTTCACCTGCCTTTGTTGACCCAGCATACATTTATAGCACAGATTCATCATCTGTGCTTGGAACACCAGTTACTAGTCTGCCTTTGTCATCTTGGAACTATAATGCGAAACCACCTGCTAGTGTGCCACAATTGACTACAGATGACACGGGATGGACTGGATCTGGACAAGCTGCTCCGCTTAATGGTTGCAATAGCAGCAGTAATGACAGCACTCACCTGGCTTTGCCAAGTAGTAAAGGGATTAATCAAGGCAATCAAGGCAATGTGGGCAAGCCAGTTCATGTCATGCCAGATTTTGCACAAGTATACAACTTCATTGGCAGTGTATTTGATCCAAATTCAACTAATCACCTACAGAGATTAAAGCAGATGGACCCAATAAATGTTGAAACGACACTGCTATTGATGAGAAACCTCTCCATTAATCTAATGAGCCCAGAATTCGAGGATCATAAGAGGCTACTGTCGTCATATGATGCTGACAGTGAAAAGGGAAAGTTTGCTAATTCAAGCAGCAGCAAAACCATGCCTGTTGTAAAATCTGAAAATGCCGTTTTTTCTGCTTAG 1020 0.4431 MVSVNPNQTQAFYFFDPSNMGLPGVNQLPPPPQPPTTAAASTTSEDPNKKIRKPYTITKSRESWTDQEHDKFLEALQLFERDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNVPTASLVTGPLQSSPAFVDPAYIYSTDSSSVLGTPVTSLPLSSWNYNAKPPASVPQLTTDDTGWTGSGQAAPLNGCNSSSNDSTHLALPSSKGINQGNQGNVGKPVHVMPDFAQVYNFIGSVFDPNSTNHLQRLKQMDPINVETTLLLMRNLSINLMSPEFEDHKRLLSSYDADSEKGKFANSSSSKTMPVVKSENAVFSA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04377 339 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vivi7g04377 339 SMART sant 60 108 IPR001005 -
Vivi7g04377 339 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Vivi7g04377 339 Gene3D - 64 111 - -
Vivi7g04377 339 MobiDBLite consensus disorder prediction 314 339 - -
Vivi7g04377 339 MobiDBLite consensus disorder prediction 311 339 - -
Vivi7g04377 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vivi7g04377 339 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vivi7g04377 339 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Vivi7g04377 339 CDD SANT 63 106 IPR001005 -
Vivi7g04377 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Vivi7g04377 339 MobiDBLite consensus disorder prediction 22 55 - -
Vivi7g04377 339 MobiDBLite consensus disorder prediction 198 240 - -
Vivi7g04377 339 PANTHER SWI/SNF COMPLEX-RELATED 36 295 - -
Vivi7g04377 339 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vivi7g04377 339 MobiDBLite consensus disorder prediction 110 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04377 Vivi-Chr7 113673767 113678707 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi7g04377 Myb_DNA-binding 8.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04377 - - gmx:778090 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04377 7 113673767 113678707 Vivi7g04377 7 113673767 113678707 ECH
Vivi7g04377 7 113673767 113678707 Vivi7g04377 7 113673767 113678707 PCT