Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04360 ATGTTGCCCCACCCTTCCAAGTTCCAAAGGGACCAACCAAGCAAACCAAGCAGTAATGAATATCATAAAACCAATCACCAAATCAACGCAACCATTGAATGGCGTTCAAGTTTTGAGTTACTCTTAGTATTAAATGCAGCAACTAAGACCCTCACCCACCTTTCAAAACTCCCAAAATTATTCTCAACAATACCCTCTCCCAAATGGAATATTCCCCTTTTCATCCTTCAAATCATCACCATTTCCATGTCTTCCTCAACCCCTTACACTTACTCCCCTCCACCACCTCCTCCTCCGCCTCTTCCTTATCTCTCCAACCTCGGCTTCGGTTACTCCATCGCCATCGCTCTCGGCTTCCTCTTCCTCCTCTCCACTCTCATCCTTTCCTCCTACCTCTGTTGCCGCACTTTCCGTAACCGTCGTAACAACCACAACAGCAACATCAACAACCAACGAAACTCTGACGGTATAGTTCTACCGCGTGTGATTTTCGTTGCGGAGGAGGATGATCATGATCGGGACGATATTGTTTTGGGATTGGACCAGAGCGTGATCAACTCTTACCCGAGGCTGCAGTATGGGAAGGAGACGATGGGACAGGATGGAACTTGCTCGATCTGTTTGTGTGAGTATAAGGATGCCGAGATGCTGAGGATGATGCCGGAATGTCGACACTATTTTCATCTCTGTTGTCTTGATTCGTGGTTGAAGCTTAATGGCTCTTGTCCGGTGTGTCGGAATTCGCCTATGCCGACGCCGATGTCGACGCCGTTGCAGGAGGTTGTTCCGCTTTCGCATTACATTGGTGAAAGGAGAACGAGGAGGTGA 828 0.4819 MLPHPSKFQRDQPSKPSSNEYHKTNHQINATIEWRSSFELLLVLNAATKTLTHLSKLPKLFSTIPSPKWNIPLFILQIITISMSSSTPYTYSPPPPPPPPLPYLSNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRRNNHNSNINNQRNSDGIVLPRVIFVAEEDDHDRDDIVLGLDQSVINSYPRLQYGKETMGQDGTCSICLCEYKDAEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPMSTPLQEVVPLSHYIGERRTRR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04360 275 SMART ring_2 204 245 IPR001841 -
Vivi7g04360 275 ProSiteProfiles Zinc finger RING-type profile. 204 246 IPR001841 -
Vivi7g04360 275 MobiDBLite consensus disorder prediction 1 22 - -
Vivi7g04360 275 SUPERFAMILY RING/U-box 184 251 - -
Vivi7g04360 275 PANTHER RING-H2 FINGER PROTEIN ATL67 83 274 IPR044289 GO:0016567|GO:0016740
Vivi7g04360 275 Pfam Ring finger domain 203 246 IPR001841 -
Vivi7g04360 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 251 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04360 Vivi-Chr7 113396606 113398162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04360 102 268 C3H Transcription Factor Family AT5G07040 38.824 5.50e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04360 - - vvo:131616597 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04360 7 113396606 113398162 Vivi7g04360 7 113396606 113398162 ECH
Vivi6g02907 6 116045998 116046982 Vivi7g04360 7 113396606 113398162 PCT