Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04267 ATGAACCCTGCTGCCCAAAACGCGGCGGCCAACAAAAAAAGCGGCTCCAGTTCACGGAAGAGAAAAAACCGTGACCTGAAAAACGGTAAACCTAATGGAAGTTCAAAAAAAAGGTTTCAAACTACCAACAATGAGGTCGTAGAAGAAGTAAATTTGAACAAAAGCCGTGTTGATAACGGTGGTTCTGGAAGCATAGTCGTAACTGATTCTTATTTAAGTGATTCCAGATTCGATAAATGTTCGGTTTCGCCGTTGTCGTTAAAAGGAATTAAGGATGCTGGATATGAGAAAATGACTCTTGTTCAGGAAGCAACACTTCCAGTTATTCTGAAAGGTAAGGATGTCTTGGCTAAAGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAACTTGTTGTGAAGTCTCCGCCAACTGATCGTGGTCAAAAGCGGACACCGATTCTTATTCTTGTCATCTGCCCAACTCGAGAGCTTGCTTGTCAAGCTGCTGCAGAAGCAACTAAACTTCTTAAGTATCATCCTACCATCGGTGCTCAAGTTGTGATTGGAGGAACAAATCTTAGTTCAGAACAGAAACATATGCAATCAAATCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCACATTGATAATACTGCCGGTTTTGCATCTAGGCTTATGGGGGTGAAGGCCTTGGTGCTCGATGAAGCCGATCATTTACTAGACATGGGGTTTCGCAAAGATATTGAGAAAATAATTGCTGCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCGTTCCGGACTCGGTGCATCAAGTCTGTAAGATTGCATTGAGAAAGGATTTTGAATTTATTTCTACAGTTAAGGAGGGTACTGAGGAGACGCATTCAAAGGTTAACCAAAAGTATTTAGTTGCCCCACCAGACAAGCATTTCTCTTTACTCTATGCTATTCTGAAGGAGCACATTGCTGATGATGCTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTTCAGATCTCCTTGGGAGGTTGAACTTGAAAGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAATTTCTGATGAATTCCGCAGATCAAAGGGTCTCATCCTTGTTACTTCGGATGTATCCGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTCGTACAGGTTGGGCTACCGACTGATAAACAACAATATATACATCGACTAGGTAGAACAGGGCGAAAAGGAAAAGAAGGGCAGGGCATACTGCTACTAGCTCCTTGGGAAGAATTCTTTTTAGATTCCGCAAAAGATTTGCCTATTGGGAAAGCTCCGGTACCTTCAGTTGATCCTGACACTAAGAAAAAGGTGGAAAGGGCTATATCGAATGTGGAGATGGAGAATAAAGAAAAAGCATATCAAGCATGGCTTGGTTACTACAATTCAAATAAGAAAATTGGGAAAGATAAGAAGAAGTTAGTGGAGCTTGCAAATGAATTCAGTAGATGCATGGGGCTTGATACCCCTCCAGCTATCTCTCATCTTATCCTTCGTAAGATGGGTCTTGGAAATGTCCCTGGTTTACGTTCCAAATAG 1632 0.4185 MNPAAQNAAANKKSGSSSRKRKNRDLKNGKPNGSSKKRFQTTNNEVVEEVNLNKSRVDNGGSGSIVVTDSYLSDSRFDKCSVSPLSLKGIKDAGYEKMTLVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIELVVKSPPTDRGQKRTPILILVICPTRELACQAAAEATKLLKYHPTIGAQVVIGGTNLSSEQKHMQSNPCQILVATPGRLRDHIDNTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPDSVHQVCKIALRKDFEFISTVKEGTEETHSKVNQKYLVAPPDKHFSLLYAILKEHIADDADYKVLVFCTTAMVTRLVSDLLGRLNLKVREIHSRKPQSYRTRISDEFRRSKGLILVTSDVSARGVDYPDVTLVVQVGLPTDKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLDSAKDLPIGKAPVPSVDPDTKKKVERAISNVEMENKEKAYQAWLGYYNSNKKIGKDKKKLVELANEFSRCMGLDTPPAISHLILRKMGLGNVPGLRSK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04267 543 Gene3D - 298 521 IPR027417 -
Vivi7g04267 543 Pfam Helicase conserved C-terminal domain 320 428 IPR001650 -
Vivi7g04267 543 SMART helicmild6 347 428 IPR001650 -
Vivi7g04267 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 443 IPR027417 -
Vivi7g04267 543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 289 IPR014001 -
Vivi7g04267 543 CDD SF2_C_DEAD 304 437 - -
Vivi7g04267 543 PANTHER RNA HELICASE 27 478 - -
Vivi7g04267 543 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 103 IPR014014 GO:0003724
Vivi7g04267 543 MobiDBLite consensus disorder prediction 1 44 - -
Vivi7g04267 543 CDD DEADc_MSS116 82 291 - -
Vivi7g04267 543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 484 IPR001650 -
Vivi7g04267 543 SMART ultradead3 94 307 IPR014001 -
Vivi7g04267 543 Gene3D - 20 289 IPR027417 -
Vivi7g04267 543 Pfam DEAD/DEAH box helicase 100 277 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04267 Vivi-Chr7 111305645 111310294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04267 68 456 Eukaryotic Initiation Factors Gene Family AT3G19760 28.643 7.58e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04267 - - adu:107463398 796.578