Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04263 ATGATGAGTCCAAAGGAAAAGAAACTTGTGAGGTTTGTGAGAAAATCTAAACCATGTATTAGTCCTGCGAAAAACAATGAACCATCGAAAAAACCAGCTTCTTGGTGGAGTGTACTTGATCCACAAGGTCCGCTGCTTCAAAAATGGAACAAGATCTTTGTAATAACATGTGTCATGGCAGTGTCGATGGATCCGCTGTTCTTTTACATCCCTGTGATTGATGATGAGAAAAAGTGCCTTGGTTTGAATGGAACATTGAAGATTACTGCCAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTCTTCGTATAGTGTTTCAGTTTCGAACTGGGTTTATTGCTCCTTCTTCGAGCGCGTTTGGAAGGGGCGAGCACGTTGTTGATCCTTGGGCTATAGCAGTGAGATACTTGAGTTCTCATTTCATCATTGATATTCTATCAATTCTTCCACTTCCCCAGATGGTGATTTTGGCTATGATTCCAATTCCACAATGTTCAGTTCCATATAGAGCAAAGGAATGGTTGAAGTACACAATAATAACACAGTATGCGCCGAGACTTTTGCGAATCTATCCGCTGTTCAAAGAAGTAACAAGCACTTCTGGTATACTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTGGTTGGAGCTTTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGGTGTTGGCGCAAACGGTTGAGGAATACTGGACTTTTTGATGATTCCTATTTGAGCTGTGGATGGGTTAATGCGACTGTTTTATCGCTTCTCAGCAACTCTACTACTTGTCCTTTCAAAGAACCTGATGATATCGTTGATCCAACAGTTTTTGATTTTGGAATATTTATAGATGGTCTAAAGTCTCGTGTCGTCAGTTCGACTACAGACTTTCATCATAAATTCTTCTACTGTTTTTGGTGGGGTTTCCGGAATTTAAGTTCTGTTGGACAGAACTTGAAAACAAGCACTTATATTGGGGAGATAATCTTCGCGATCTTCATCGCTGTCTATGGATTGGTTCTATTCGCATTTCTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTCAAGAGGAGGGATGCTGAACATTGGATGCGCCACCGTAAGCTACCGGAGCACATGAAGCGAAGAATTCGACGGTATGAACAATACAAATGGCAAGAAAATCGAGGTGTTGAAGAGGAGAGGTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTGCTTAAAAAAGTGCCAATTTTTGGCAAAATGGATAAACAGTTGCTGGATGCAATGTATGATAAACTCAAACCAGTCCTTTACACCGAGAAAAGTTACGTTGTTCGCGAAGGTGATCCGGTGGACGAAATGCTCTTCATCATGCGCGGAAAACTTGCGACCACAACTGGTATCTTTAACTCGTGGGAGCTTAAGTCTGGTGATTTTTGTGGAGAGGAGCTTCTAACATGGGCATGGGATCCTACCACTTCCTCTAACTTACCTATTTCAACTAGCACTGTGGAAACTCTTTCAGATGTTGAAGCTTTTGCTATCATGCCTGATGACTTGAAGATTCTTGCCTTTCAATTTCGCCGTCTTATTAGCAGAAAACAAATTCAGCACAATTTTAGGTGTTGTTCATTGCAATGGAGGGCATGGGGAGCGCGGTTCATACAAGTAATATGGCGTCGATATAGAGAAAAAAAGGCTCAGAAAGCATTGCGTGAAGCGGAAGAAGGACAACAAAATGCTTGTGAAAATGAGAAAGAGTGTTCACCAAGCTTTGTTGCCACCATGTATGTACGAAAGTTTGCATCTAATGCATTAAGGCATATAAGAAGTGGCAAAAGAGTGACGGAGACGCAGACAAATAGATTGCTACCACTCATGCCTAAGAAACCAGCTGAGCCAGATTTCATTACTCAAAAGTAG 2010 0.41 MMSPKEKKLVRFVRKSKPCISPAKNNEPSKKPASWWSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPVIDDEKKCLGLNGTLKITASVLRTFFDLFYILRIVFQFRTGFIAPSSSAFGRGEHVVDPWAIAVRYLSSHFIIDILSILPLPQMVILAMIPIPQCSVPYRAKEWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRKRLRNTGLFDDSYLSCGWVNATVLSLLSNSTTCPFKEPDDIVDPTVFDFGIFIDGLKSRVVSSTTDFHHKFFYCFWWGFRNLSSVGQNLKTSTYIGEIIFAIFIAVYGLVLFAFLIGNMQKYLQSTTVRVEEMRVKRRDAEHWMRHRKLPEHMKRRIRRYEQYKWQENRGVEEERLIRNLPKDLRRDIKRHLCLDLLKKVPIFGKMDKQLLDAMYDKLKPVLYTEKSYVVREGDPVDEMLFIMRGKLATTTGIFNSWELKSGDFCGEELLTWAWDPTTSSNLPISTSTVETLSDVEAFAIMPDDLKILAFQFRRLISRKQIQHNFRCCSLQWRAWGARFIQVIWRRYREKKAQKALREAEEGQQNACENEKECSPSFVATMYVRKFASNALRHIRSGKRVTETQTNRLLPLMPKKPAEPDFITQK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04263 669 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 665 - -
Vivi7g04263 669 Gene3D - 51 370 - -
Vivi7g04263 669 CDD CAP_ED 446 562 IPR000595 -
Vivi7g04263 669 SMART cnmp_10 446 571 IPR000595 -
Vivi7g04263 669 SUPERFAMILY cAMP-binding domain-like 375 556 IPR018490 -
Vivi7g04263 669 Gene3D Jelly Rolls 444 558 IPR014710 -
Vivi7g04263 669 Gene3D Helix hairpin bin 373 437 - -
Vivi7g04263 669 ProSiteProfiles cAMP/cGMP binding motif profile. 446 524 IPR000595 -
Vivi7g04263 669 FunFam Cyclic nucleotide-gated ion channel 1 373 437 - -
Vivi7g04263 669 Pfam Ion transport protein 49 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi7g04263 669 SUPERFAMILY Voltage-gated potassium channels 40 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04263 Vivi-Chr7 111211113 111214621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04263 7 665 Ion Channels AT4G01010 59.641 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04263 K05391 - gmx:100795201 962.214