Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04260 ATGGGTATCTTAAAAGTCCTTTTTTACTTGATCTTTCCTGTCATACATGCCTCCGTTAGCAATTGCCCATTTTCTTTATGTGGAAACTTTAGTTTACCTATTCGTTTCCCCTTTCAACTTGAAGGTGAGCAATCTCCTTATTGTGGCTATCCTGGTTTCACCTTAATTTGTTCGAATCATAGAAAAACAATTCTAGAACTTCCTAATTCCGGAGAATTCTATGTTCGCAGCATAAACTATCTCACGCAACAGATACAACTCTATGATCCTGACGATTGTCTTCCCAAACGTCTTCTAAGCCTCAATTTTTCAAATTCTCCTTTCACTTCTACTTTTAGTCGCGACTACACCTTTTTAAGCTGCTCATCTCAAAATATAGGGTCACAATTCACTCCCATTGATTGTCTCAGTAATTCCACATATTTTGTATCAGCCATTCCTTCTGTGAACTTGGTCAATCCACTTCCTGGTTCTTGCTCTATTATGAAAAGGCTTTTAGTTCCAGTTGCAAGACAAGAACGGTATGAAGAAAATCTCAGAGATGATCTCAGTGCAGATCTTCAATTAACATGGGATAAACCCGACTGCAGTTATTGTGAATTTAATCAGCTAATGTGTGGATTCGAAAGCATTTACAACAGTAAAGTTGTCTGTATCTCTGATTACAAAGCAGGTACATCGCGACAAGGACTTAAAATTTTCAGAATCATAGCATTATGTGTTACTGGACCAGCTCTAATCTTTGTTATATTAATGGCAAGTTGTGTATGCTACAATGACAGAATAGCAAACATTACCAGAAACGCAGCTTCTAGGTCTGCACCAGCTGCGATAGCACCGCAACCTGAAATCGTAGTAGCTACAGGCTTAGATGAAACCACTATTGAATCTTATGAGAAGGTAGTTCTTGGGGAGAGTCGACGTGTTCCTGGACCGAACGATGGATGTTGTTGGATATGCTTGTCGGAGTACAATAGTAAAGAGACAGTAAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTGATTGCATTGATGAGTGGCTTCGTATTAATAATACGTGCCCTGTTTGTCGAAACTCACCGGCTCCTTCTCCTCTTAATGTTACTTCTAGTAATCTTTGA 1125 0.3911 MGILKVLFYLIFPVIHASVSNCPFSLCGNFSLPIRFPFQLEGEQSPYCGYPGFTLICSNHRKTILELPNSGEFYVRSINYLTQQIQLYDPDDCLPKRLLSLNFSNSPFTSTFSRDYTFLSCSSQNIGSQFTPIDCLSNSTYFVSAIPSVNLVNPLPGSCSIMKRLLVPVARQERYEENLRDDLSADLQLTWDKPDCSYCEFNQLMCGFESIYNSKVVCISDYKAGTSRQGLKIFRIIALCVTGPALIFVILMASCVCYNDRIANITRNAASRSAPAAIAPQPEIVVATGLDETTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETVRCIPECKHCFHADCIDEWLRINNTCPVCRNSPAPSPLNVTSSNL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04260 374 SUPERFAMILY RING/U-box 310 362 - -
Vivi7g04260 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 364 IPR013083 -
Vivi7g04260 374 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Vivi7g04260 374 SMART ring_2 317 358 IPR001841 -
Vivi7g04260 374 CDD RING-H2_EL5-like 316 359 - -
Vivi7g04260 374 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Vivi7g04260 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 362 IPR046948 -
Vivi7g04260 374 Pfam Ring finger domain 317 359 IPR001841 -
Vivi7g04260 374 Pfam Wall-associated receptor kinase C-terminal 167 219 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04260 Vivi-Chr7 111193528 111195407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04260 16 365 C3H Transcription Factor Family AT2G46495 45.404 1.59e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04260 - - gmx:100798415 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04260 7 111193528 111195407 Vivi7g04260 7 111193528 111195407 ECH
Vivi6g05257 6 157274025 157275711 Vivi7g04260 7 111193528 111195407 PCT